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TranscriptomicsVibrio cholerae N16961 overexpression of CpxR
Transcriptionnal profiling comparing a V. Choleare M-bM-^HM-^FcpxR mutant harboring either (pBAD33-cpxR) or empty (pBAD33) grown for 1h under inducing conditions. Two independent experiments with a technical replicate for each.
ORGANISM(S): Vibrio cholerae O1 biovar El Tor str. N16961 
2014-05-03 | E-GEOD-54081 | biostudies-arrayexpress
ProteomicsProteomic analysis of small intestine luminal contents in IL22Fc-treated mouse
Proteomic analyis was perfomred to identify the IL22Fc-induced proteins/polypeptides in the murine small intestine contents
ORGANISM(S): Mus musculus (Mouse) 
2026-04-13 | PXD075406 | Pride
Mouse Luminal contents Small intestine Il22fc 
TranscriptomicsVibrio cholerae N16961 cpxA*
Transcriptional profiling comparing a V. cholerae cpxA* mutant relative to WT at an OD600 of 1. Three independent experiments with a technical replicate for each.
ORGANISM(S): Vibrio cholerae 
2014-05-03 | E-GEOD-55037 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Francisella tularensis LVS carrying plasmid pFNLTP6-gro or pFNLTP-gro-0851 (expressing rpoH) grown to mid exponential phase
F. tularensis LVS carrying plasmid pFNLTP6-gro or pFNLTP-gro-0851 (expressing rpoH) were grown to mid exponential phase in Schaedler + vitamin K3 medium and RNA isolated.
ORGANISM(S): Francisella tularensis 
2009-07-01 | E-MEXP-2048 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Francisella tularensis LVS after heat shock
Effect of temperature upshift at 44°C for 30 minutes on transcription in Francisella tularensis LVS
ORGANISM(S): Francisella tularensis 
2009-07-01 | E-MEXP-2037 | biostudies-arrayexpress
TranscriptomicsRNA sequencing for Comparisons of Vibrio Cholerae Wild Type and VchM Knock Out
DNA methylation is a key epigenetic regulator in all domains of life, yet the effects of most bacterial DNA methyltransferases on cellular processes are largely undefined. Here, we used diverse techniques, including bisulfite sequencing, transcriptomics, and transposon insertion site sequencing to e...
ORGANISM(S): Vibrio cholerae 
2015-10-26 | E-GEOD-73975 | biostudies-arrayexpress
GenomicsBisulfite Sequencing for Studying 5mC DNA Methylation Distribution in Vibrio Cholerae
DNA methylation is a key epigenetic regulator in all domains of life, yet the effects of most bacterial DNA methyltransferases on cellular processes are largely undefined. Here, we used diverse techniques, including bisulfite sequencing, transcriptomics, and transposon insertion site sequencing to e...
ORGANISM(S): Vibrio cholerae 
2015-10-26 | E-GEOD-73974 | biostudies-arrayexpress
ProteomicsProteomic analysis of the pathogen surface in cholera identifies host proteins involved in defense and microbiota recognition
The microbial cell surface is a critical site of microbe-host interactions that often control infection outcomes. Defining the set of host proteins present at this interface has been challenging. Here, we used a surface biotinylation approach coupled to quantitative mass spectrometry to identify and...
ORGANISM(S): Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) Oryctolagus cuniculus (Rabbit) 
2021-10-02 | PXD027076 | Pride
Oryctolagus cuniculus Vibrio cholerae 
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