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TranscriptomicsGenome-wide transcriptome analysis bZIP29 dominant negative repressor line in root tips of Arabidopsis
The Arabidopsis basic leucine zipper transcription factor bZIP29 of the bZIP group I TF family, expressed mainly in proliferative tissues, is functionally characterized in this study. In roots, bZIP29 is highly expressed in the quiescent centre and the columella cells of the root apical meristem. Mu...
ORGANISM(S): Arabidopsis thaliana 
2016-11-07 | E-MTAB-3755 | biostudies-arrayexpress
UnknownAn unusual xylan in Arabidopsis primary cell walls is synthesised by GUX3, IRX9L, IRX10L and IRX14.
Not available
S-EPMC4528235 | biostudies-literature
TranscriptomicsTranscriptomic study (RNAseq) of Brachypodium distachyon ecotypes Bd21 and Bd2-3 under submergence stress
Purpose: The goal of this study is to compare the transcriptomes expressed during submergence stress of two Brachypodium distachyon ecotypes with contrasting survival under this stress. Bd21 is a submergence sensitive ecotype with EC50 of 2.5 days and Bd2-3 is a tolerant ecotype with EC50 of 4 days....
ORGANISM(S): Brachypodium distachyon 
2016-01-04 | E-GEOD-74222 | biostudies-arrayexpress
TranscriptomicsGenome-wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose (Wheat straw) using RNA-sequencing
We have studied the physiological response of the fungus Aspergillus niger when exposed to wheat straw as a model lignocellulosic substrate. Using RNA-sequencing we showed that, 24 hours after exposure to straw, gene expression of known plant cell wall degrading enzymes represents a huge investment ...
ORGANISM(S): Aspergillus niger 
2012-08-27 | E-GEOD-33852 | biostudies-arrayexpress
TranscriptomicsCharacterization of arterial dendritic cells in giant cell arteritis and polymyalgia rheumatica
Giant cell arteritis and polymyalgia rheumatica are two frequently overlap conditions. A pathophysiological continuum between these two diseases has been highlighted by the demonstration of activated dendritic cells in the arterial wall of PMR and GCA patients. However, in PMR, activation of these d...
ORGANISM(S): Homo sapiens 
2026-01-18 | E-MTAB-13739 | biostudies-arrayexpress
TranscriptomicsNatural variation of transcriptional response to mild drought in growing Arabidopsis leaves
RNA-seq data of Arabidopsis thaliana accessions exposed to mild drought or control treatments. The sampled tissue is the third leaf at the last day of proliferation (cell division phase).
ORGANISM(S): Arabidopsis thaliana 
2016-09-26 | E-MTAB-5009 | biostudies-arrayexpress
UnknownGT61 β-1,2-xylosyltransferases define a conserved xylan modification in gymnosperm and Arabidopsis primary cell walls.
Not available
S-EPMC12579940 | biostudies-literature
TranscriptomicsThe Stockholm Atherosclerosis Gene Expression (STAGE) study: Global Gene Expression data from coronary and carotid artery disease patients
Tissue samples have been isolated during corornary artery by-pass grafting (CABG)surgery from the atheroscelrotic arterial wall (AAW, aortic root puncture for proxmal ligation of by-pass vessel), non-atherosclertoci arterial wall (NAAW, distal part of mammary artery used a graft for LAD), liver, sk...
ORGANISM(S): Homo sapiens 
2012-08-21 | E-GEOD-40231 | biostudies-arrayexpress
GenomicsA Genomic History of Aboriginal Australia
The population history of Aboriginal Australians remains largely uncharacterised. We generated high-coverage genomes for 83 Aboriginal Australians (speakers of Pama-Nyungan languages) and 25 Papuans from the New Guinea Highlands. We find that Papuan and Aboriginal Australian ancestors diversified 25...
EGAS00001001766 | EGA
TranscriptomicsDecoding the black box of cellulase formation in Hypocrea jecorina by RNA-Seq analysis
Hypocrea jecorina (anamorph Trichoderma reesei) is one of the most well studied fungi used in biotechnology industry. This fungus is today a paradigm for the comercial scale production of different plant cell wall degrading enzymes, mainly cellulases and hemicellulases. The objective of this study w...
ORGANISM(S): Trichoderma reesei 
2014-04-01 | E-GEOD-53629 | biostudies-arrayexpress
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