Wang Dan Min DM

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Transcriptomics (9)
Genomics (5)
Metabolomics (5)
Unknown (4)

Organisms

Mus musculus (7)
Homo sapiens (4)
Citrus reticulata (1)
Staphylococcus epidermidis (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (12)
MetaboLights (5)
EGA (2)

Technology Type

Mass spectrometry (4)
Mass spectrometry assay (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (2)
Flow injection analysis MS - (1)
Liquid Chromatography MS - positive - hilic (1)
MS Imaging - (1)

Publication Date

2014 (3)
2015 (2)
2013 (2)
2012 (2)
2010 (2)
2024 (2)
2009 (1)
2008 (1)
2025 (1)
2023 (1)

CHEBI ID

CHEBI:15354 (2)
CHEBI:16610 (2)
CHEBI:16811 (2)
CHEBI:16919 (2)
CHEBI:17148 (2)
CHEBI:17822 (2)
CHEBI:18257 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:26271 (2)
CHEBI:27266 (2)
CHEBI:27897 (2)
CHEBI:28300 (2)
CHEBI:29016 (2)
CHEBI:37024 (2)
CHEBI:10055 (1)
CHEBI:101085 (1)
CHEBI:1060 (1)
CHEBI:113542 (1)
CHEBI:116314 (1)
CHEBI:125471 (1)
CHEBI:131158 (1)
CHEBI:131456 (1)
CHEBI:131659 (1)
CHEBI:131690 (1)
CHEBI:132244 (1)
CHEBI:132837 (1)
CHEBI:133013 (1)
CHEBI:133066 (1)
CHEBI:133172 (1)

Metabolite Name

Aminoadipic acid (2)
Choline (2)
Creatine (2)
Methionine (2)
Proline (2)
Putrescine (2)
Spermidine (2)
Valine (2)
(+)-8'-hydroxyabscisic acid (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-beta-d-glucoside (1)
(-)-lupinine (1)
(11z,14z)-eicosadienoylcarnitine (1)
(1s,2r)-1,2-dihydrodibenzo[b,d]thiophene-1,2-diol (1)
(1s,2r,3s,5s,6s,16e,18e,20r,21s)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,16-trimethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl 2-methylpropanoate (1)
(2,7-dimethyloctahydro-1h-cyclopenta[c]pyridin-4-yl)methanol (1)
(2e)-2-[(4z)-5-(methylsulfanyl)-4-penten-2-yn-1-ylidene]-1,6-dioxaspiro[4.4]non-3-ene (1)
(2r,3s)-2-methylcitric acid (1)
(2s,3r,4e,8e)-3-hydroxy-2-[methyl(stearoyl)amino]-4,8-octadecadien-1-yl hydrogen sulfate (1)
(2s,3s,4s,5r,6s)-6-(hydroxymethyl)-5-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)-5-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2h-pyran-2-yl]oxy}tetrahydro-2h-pyran-2-yl]oxy}tetrahydro-2h-pyran-2,3,4,5-tetrol (1)
(2s,4ar,4br,6as,12bs,12cs,14as)-2-(2-hydroxy-2-propanyl)-12b,12c-dimethyl-3,4,5,6,6a,7,12,12b,12c,13,14,14a-dodecahydro-2h-chromeno[5',6':6,7]indeno[1,2-b]indole-4a(4bh)-carbaldehyde (1)
(2s,4s)-4-amino-2-hydroxy-2-methylpentanedioic acid (1)
(2s,4s)-pinnatanine (1)
(2z)-3-{5-[(4z)-5-(methylsulfanyl)-4-penten-2-yn-1-yl]-2-furyl}acrylaldehyde (1)
(2z,4z)-2-hydroxyhexa-2,4-dienoic acid (1)
(3-methyl-2-butenyl)-benzene (1)
(3s,5r,6s,7e,9x)-7-megastigmene-3,6,9-triol 9-glucoside (1)
(4-methylphenyl)acetaldehyde (1)
(4e,6e,d14:2) sphingosine (1)
(7s)-7-{[(2s)-9-hydroxy-2-isobutyl-3-oxo-2,3,9,9a-tetrahydro-1h-imidazo[1,2-a]indol-9-yl]methyl}-6,7-dihydroquinazolino[3,2-a][1,4]benzodiazepine-5,13-dione (1)
(9e,15e)-heptadec-9,15-trien-11,13-diyn-4-one (1)

Study type

Transcription profiling by array (6)
ChIP-seq (3)
RNA-seq of coding RNA (2)
Unknown experiment type (1)

Release Date

2015 (3)
2014 (2)
2013 (2)
2012 (2)
2010 (2)
2009 (1)
2008 (1)
2025 (1)
2023 (1)
2021 (1)

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Comparison of gene expression profile of human trabecular meshwork cells induced by triamcinolone with dexamethasone

PURPOSE. Triamcinolone acetonide (TA) and dexamethasone (DEX) are corticosteroids commonly used for ocular inflammation but both can cause ocular hypertension. We investigated the differential gene expression profile of human trabecular meshwork (TM) cells in response to treatment by TA compared to ...

ORGANISM(S): Homo sapiens

2008-05-01 | E-GEOD-6298 | biostudies-arrayexpress

The oncoprotein SET promotes serine-derived one-carbon metabolism by regulating SHMT2 enzymatic activity

Cancer cells frequently reprogram one-carbon metabolic pathways to fulfill their vigorous demands of biosynthesis and antioxidant defense for survival and proliferation. Dysfunction of oncogenes or tumor suppressor genes is critically involved in this process, but the precise mechanisms by which can...

2025-04-22 | MTBLS11711 | MetaboLights

Circadian Enhancers Coordinate Multiple Phases of Rhythmic Gene Transcription In Vivo

Mammalian transcriptomes display complex circadian rhythms with multiple phases of gene expression that cannot be accounted for by current models of the molecular clock.M-BM- We have determined the underlyingM-BM- mechanisms by measuring nascent RNA transcription around the clock in mouse liver. U...

ORGANISM(S): Mus musculus

2014-11-21 | E-GEOD-59486 | biostudies-arrayexpress

PRODH regultes naive pluripotency by influencing mitochondrial oxidative phosphorylation (Targeted metabolomics)

Naïve human embryonic stem cells (hESCs) that resemble the pre-implantation epiblasts are fueled by a combination of aerobic glycolysis and oxidative phosphorylation, but their mitochondrial regulators are poorly understood. Here we report that, proline dehydrogenase (PRODH), a mitochondria-local...

2024-02-12 | MTBLS7832 | MetaboLights

PRODH regultes naive pluripotency by influencing mitochondrial oxidative phosphorylation (Untargeted metabolomics)

2024-02-12 | MTBLS7840 | MetaboLights

SarZ is a key regulator of biofilm formation and virulence in Staphylococcus epidermidis

Biofilm-associated infection by the leading nosocomial pathogen Staphylococcus epidermidis is a major problem for the public health system. Here we used an especially discriminatory, two-step screen to discover key biofilm factors. We identified the transcriptional regulator and SarA paralog SarZ as...

ORGANISM(S): Staphylococcus epidermidis

2010-05-25 | E-GEOD-8523 | biostudies-arrayexpress

Mass spectrometry imaging as an emerging tool for studying metabolism in human brain organoids

Human brain organoids are emerging models to study human brain development and pathology as they recapitulate the development and characteristics of major neural cell types, and enable manipulation through an in vitro system. Over the past decade, with the advent of spatial technologies,...

2023-05-23 | MTBLS7565 | MetaboLights

Genome wide association study of leprosy in Chinese population

Leprosy is a chronic infectious disease caused by Mycobacterium leprae (M. leprae). Due to M. leprae's narrow host range and an inability to be cultured in vitro, the biological investigation of this disease has been difficult. Host genetic factors have been ...

phs000217.v1.p1 | EGA

Genome-Wide Association Studies in Upper Gastrointestinal Cancers (Asian)

This project aims to conduct genome-wide association studies (GWAS) in two anatomically different upper gastrointestinal (UGI) cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cel...

phs000361.v1.p1 | EGA

Discrete Functions of Rev-erba Couple Metabolism to the Clock [HTS]

Circadian and metabolic physiology are intricately intertwined, as illustrated by Rev-erb , a transcription factor (TF) that functions both as a core repressive component of the cell autonomous clock and as a regulator of metabolic genes. Here we show that Rev-erb modulates the clock and metabolis...