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ProteomicsIdentification of missing proteins in the proteome atlas of multiple healthy human tissues
We re-analyzed the deep proteome atlas of 29 paired healthy human from the published paper (Wang, Dongxue, et al. Molecular systems biology 15.2 (2019)) to identify missing proteins.
ORGANISM(S): Homo sapiens (Human) 
2020-11-17 | PXD021391 | Pride
Chpp Open-pfind Missing proteins Mutiple tissues 
ProteomicsLysine acetylproteome profiling reveals key acetylated proteins involved in heat shock response in the sea cucumber Apostichopus japonicus
Intestine of a total of 9 idividuals was sampled. The individuals were collected from 3 groups: Control (C), Heat stress 6h (HS6h) and Heat stress 48h (HS48h).After protein extraction,trypsin digestion and enrichment of Lys-acetylated peptides, the eluted peptides was applied with LC-MS/MS detection...
ORGANISM(S): Stichopus japonicus (Sea cucumber) 
2019-11-12 | PXD013929 | Pride
Intestine Heat stress Apostichopus japonicus Acetylproteome 
TranscriptomicsThe male sterility 8 mutation of maize disrupts the temporal progression of the transcriptome and results in the mis-regulation of metabolic functions
Phenotypes of maize male sterile 8 plants are small anthers, meiotic failure, shorter epidermal cells, and non-secreting tapetal cells. Excess callose accumulates around meiotic cells, which later abort. Thousands of transcriptome changes occur including ectopic activation of genes not expressed in...
ORGANISM(S): Zea mays 
2010-08-20 | E-GEOD-23615 | biostudies-arrayexpress
ProteomicsQuantification and discovery of sequence determinants of protein per mRNA amount in 29 human tissues
We analyzed the contribution of known sequence determinants of protein synthesis and degradation and novel mRNA and protein sequence motifs that we found by association testing. In order to investigate the functional understanding of novel mRNA motifs, an RNA competitive-binding assay was developed ...
ORGANISM(S): Homo sapiens (Human) 
2019-02-20 | PXD010153 | Pride
Rna pulldown 
ProteomicsA deep proteome and transcriptome abundance atlas of 29 healthy human tissues
We generated a systematic, quantitative and deep proteome and transcriptome abundance atlas from 29 paired healthy human to serve as a molecular baseline to study human biology.
ORGANISM(S): Homo sapiens (Human) 
2019-07-10 | PXD010154 | Pride
Human proteome 
ProteomicsZASP：A Robust Method for Proteomics Sample Preparation
ZASP can effectively remove SDS, SDC, TritonX-100 and other denaturing reagents. • ZASP has short precipitation time, high protein recovery and identification number. • Compared with acetone and SP3 precipitation method, ZASP has remarkable performance. • ZASP is particularly suitable for complex sa...
ORGANISM(S): Homo Sapiens Mus Musculus 
PXD042276 |
ProteomicsVessel-on-a-Chip Coupled Proteomics Reveal Pressure-Overload-Induced Vascular Remodeling
We developed a vessel-on-a-chip to mimic both physiological and pathological stretch, along with a mouse model of hypertension. We applied proteomics analysis to investigate the changes in vascular smooth muscle cells using the vessel-on-a-chip system and changes in hypertensive mice.
ORGANISM(S): Mus Musculus 
2024-11-08 | PXD057724 |
Proteomics,MultiomicsA deep proteome and transcriptome abundance atlas of 29 healthy human tissues
We generated a systematic, quantitative and deep proteome and transcriptome abundance atlas from 29 paired healthy human to serve as a molecular baseline to study human biology.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-03-02 | MSV000083508 | MassIVE
ProteomicsDeep proteomic analysis of circulating large/small extracellular vesicle enriched fraction based on data-independent acquisition mass spectrometry
Proteins in the plasma/serum mirror an individual’s physiology. Circulating extracellular vesicle (EVs) proteins constitute a large portion of the plasma/serum proteome. Thus, deep and unbiased proteomic analysis of circulating plasma/serum extracellular vesicles holds promise for discovering diseas...
ORGANISM(S): Homo Sapiens 
PXD043290 |
ProteomicsH.sapiens - Saliva secreting gland, SC (Wangetal,molsystbiol2019)
abundance based on Spectral counting, Interaction consistency score: 22.1, Coverage: 49
ORGANISM(S): 9606 
2019-00-00 | 1236193294 | PAXDB
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