Wang Jm J - OmicsDI

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Proteomics (106)
Transcriptomics (66)
Genomics (48)
Metabolomics (37)
Genomic (1)

Organisms

Homo sapiens (130)
Mus musculus (38)
human gut metagenome (4)
Zea mays (3)
Escherichia coli (3)
Staphylococcus aureus (3)
groundwater metagenome (2)
Macaca mulatta (2)
Pan troglodytes (2)
Arabidopsis thaliana (2)
Paraprevotella clara (2)
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Mytilus edulis (1)
Schmidtea mediterranea (1)
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Oryza sativa Japonica Group (1)
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Gallus gallus (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Acyrthosiphon pisum (1)
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Phocaeicola vulgatus ATCC 8482 (1)
Porphyromonas gingivalis W83 (1)

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pride (81)
biostudies-arrayexpress (77)
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Instrument Platform

Liquid Chromatography MS - positive - reverse phase (14)
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Bruker (3)
Illumina HiSeq 2000 (2)
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MS Imaging - (2)
Illumina HiSeq 2500 (1)
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API 4000 QTRAP (AB Sciex) (1)
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Liquid Chromatography MS - (1)
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Liquid Chromatography MS - negative - direct infusion (1)

Publication Date

2024 (26)
2023 (22)
2013 (20)
2022 (16)
2025 (15)
2026 (13)
2020 (12)
2021 (12)
2010 (11)
2014 (10)
2012 (10)
2011 (9)
2019 (8)
2018 (8)
2015 (7)
2009 (7)
2016 (6)
2017 (6)
2008 (1)
2007 (1)

CHEBI ID

CHEBI:15891 (15)
CHEBI:16704 (15)
CHEBI:17368 (14)
CHEBI:17562 (14)
CHEBI:17568 (14)
CHEBI:17596 (14)
CHEBI:15428 (13)
CHEBI:15741 (13)
CHEBI:16335 (13)
CHEBI:17750 (13)
CHEBI:15940 (12)
CHEBI:16359 (12)
CHEBI:16708 (12)
CHEBI:28044 (12)
CHEBI:32816 (12)
CHEBI:15354 (11)
CHEBI:15611 (11)
CHEBI:16235 (11)
CHEBI:16450 (11)
CHEBI:16750 (11)
CHEBI:16811 (11)
CHEBI:17154 (11)
CHEBI:17172 (11)
CHEBI:17748 (11)
CHEBI:17821 (11)
CHEBI:30915 (11)
CHEBI:15676 (10)
CHEBI:16027 (10)
CHEBI:16040 (10)
CHEBI:16449 (10)

Metabolite Name

Betaine (6)
Hypoxanthine (6)
L-Phenylalanine (6)
N-Acetyl-L-alanine (6)
4-Pyridoxic acid (5)
Adenine (5)
Adenosine (5)
Alanine (5)
Cholic acid (5)
Choline (5)
Creatine (5)
Cytidine (5)
Cytidine (5)
Glutamate (5)
Glycine (5)
Guanine (5)
Hypoxanthine (5)
Inosine (5)
L-Alanine (5)
L-Citrulline (5)
L-Glutamine (5)
L-Histidine (5)
L-Leucine (5)
L-Proline (5)
L-Tyrosine (5)
N-Acetylputrescine (5)
Riboflavin (5)
Taurine (5)
Tryptamine (5)
Uridine (5)

First Public Date

2014 (1)

Study type

Transcription profiling by array (43)
RNA-seq of coding RNA (11)
ChIP-seq (9)
Comparative genomic hybridization by array (2)
Other (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by MPSS (1)
Animal - High-throughput sequencing (1)
Genotyping by array (1)
DNA-seq (1)
CUT&RUN (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (534)
2023 (515)
2022 (499)
2025 (437)
2024 (427)
2020 (397)
2018 (325)
2019 (299)
2016 (268)
2017 (266)
2015 (232)
2014 (185)
2013 (154)
2011 (105)
2012 (103)
2010 (75)
2026 (68)
2009 (45)
2008 (41)
2007 (11)
2006 (10)
2005 (9)
2004 (4)
2002 (4)
2003 (3)
2001 (2)
1999 (2)
1998 (2)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
Faculty of Medicine, University of Ottawa, Ottawa, ON Canada (3)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Department of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Departments of Immunology and Radiation Oncology Moffitt Cancer Center Tampa, FL, USA (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
St. Jude Children's Research Hospital (2)
AbbVie Bioresearch Center, Worcester, MA 01605, United States (1)
Analytical Biochemistry and Proteomics Unit (1)
Assistant Professor, Department of Chemistry, The ScrippsResearch Institute (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School Cancer Biology, Dana-Farber Cancer Institute (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)
Cell Biology, Gygi Lab, Harvard medical School, Boston, MA (1)
Center for Infectious Diseases Research Department of Pathology and Genomic Medicine Houston Methodist Research Institute USA (1)
Clayton Foundation Laboratories for Peptide Biology The Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla, CA, USA (1)
Department of Biochemistry and Biophysics, University of Pennsylvania (1)
Department of Biochemistry, University of Washington, School of Medicine, Seattle, WA 98195, USA (1)
Department of Biological Engineering and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, United States (1)
Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA (1)
Department of Biomedical Engineering, Columbia University, New York, NY, USA (1)
Department of Cell and Developmental Biology, Neuroscience Graduate Program, Department of Neurology University of Michigan Medical School, Ann Arbor, MI 48109-2200 (1)
Department of Drug Design and Pharmacology. University of Copenhagen. Denmark (1)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA (1)
Department of Medicine (1)
Department of Medicine and Animal Surgery, International Excellence Campus for Higher Education and Research “Campus Mare Nostrum”, University of Murcia, Murcia, Spain Institute for Biomedical Research of Murcia (IMIB-Pascual Parrilla), Murcia, Spain (1)
Department of Microbial Proteomics, University of Greifswald, Centre of Functional Genomics of Microbes, Institute of Microbiology, Greifswald, Germany (1)
Department of Molecular Biology, Cristea Lab, Princeton University, Princeton, NJ, US (lab head) (1)
Department of Pathology and Duke Cancer Institute, Duke University School of Medicine, Durham, NC 27710, USA (1)
Department of Pathology, University of North Carolina at Chapel Hill (1)

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Expression analyses of nanos(RNAi) and control(RNAi) Schmidtea mediterranea

Investigation of whole genome gene expression level changes in nanos(RNAi) Schmidtea mediterranea, compared to control animals. nanos(RNAi) animals are devoid of germ cells The samples analyzed in this study are further described in Wang, Y., Stary, JM., Wilhelm, JE. and Newmark, PA. 2010. A eight c...

ORGANISM(S): Schmidtea mediterranea

2010-09-01 | E-GEOD-22797 | biostudies-arrayexpress

High-Low Fat Diet/Strain Experiment

Males and females from each SM/J and LG/J were placed on either a low-fat diet or high-fat diet immediately after weaning until 20 weeks of age. At 20 weeks, mice were sacrificed in late morning after a four-hour fast and liver tissue was collected from 4 males and 4 females from each strain and die...

ORGANISM(S): Mus musculus

2014-01-30 | E-MTAB-2172 | biostudies-arrayexpress

The effect of dietary fat intake on hepatic gene expression in LG/J AND SM/J mice.

Not available

S-EPMC4028868 | biostudies-literature

ABCG2: the molecular mechanisms of urate secretion and gout.

Not available

S-EPMC4572392 | biostudies-literature

Transcriptomic effects of caloric restriction reflected in primate difference

Caloric restriction (CR) can delay morbidity and mortality in a broad range of species, including mice and macaques. Mutations and chemical agents, such as resveratrol or rapamycin that partly mimic the CR effect, can similarly increase survival or extend lifespan. In humans, however, the effects of...

ORGANISM(S): Pan troglodytes Macaca mulatta Homo sapiens Mus musculus

2013-02-28 | GSE44147 | GEO

First national record of Microhylahmongorum Hoang, Nguyen, Phan, Pham, Ninh, Wang, Jiang, Ziegler and Nguyen, 2022 (Anura, Microhylidae, Microhyla) in China.

Not available

S-EPMC10848633 | biostudies-literature

Moderate alcohol intake induces thermogenic brown/beige adipocyte formation via elevating retinoic acid signaling.

Not available

S-EPMC6207178 | biostudies-literature

A New Porcine Reproductive and Respiratory Syndrome Virus with <i>N</i>-Linked Glycosylation Site Deletion in GP5 44th Amino Acid from JXA1, NADC30-Like, and JM Triparental Recombination.

Not available

S-EPMC12016986 | biostudies-literature

A universal in silico V(D)J recombination strategy for developing humanized monoclonal antibodies.