Wang Pan P - OmicsDI

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Unknown (5611)
Proteomics (200)
Transcriptomics (127)
Metabolomics (90)
Genomics (31)

Organisms

Homo sapiens (109)
Mus musculus (54)
Danio rerio (6)
Oryza sativa (4)
Ovis aries (3)
Rattus norvegicus (3)
Viruses (2)
Cucumis sativus (2)
Aggregatibacter actinomycetemcomitans (2)
Macaca mulatta (2)
Pan troglodytes (2)
Zea mays (2)
Saccharomyces cerevisiae (2)
Tardigrada (2)
Jatropha curcas (1)
Bos grunniens (1)
Brassica oleracea (1)
Bovine viral diarrhea virus 1 (1)
Capra hircus (1)
Vaccinia virus Lister (1)
Bemisia tabaci (1)
Brassica napus (1)
Columba livia (1)
Nicotiana tabacum (1)
Setaria italica (1)
Bos taurus (1)
Caenorhabditis elegans (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Sus scrofa (1)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (152)
pride (125)
MetaboLights (89)
iProX (49)
PeptideAtlas (16)
EGA (6)
MassIVE (6)
jPOST (3)
GNPS (1)
PanoramaPublic (1)

Tissue

Cell culture (34)
Brain (12)
Liver (8)
Heart (6)
Lung (6)
Epithelial cell (6)
Skin (5)
Blood serum (4)
Lymph node (3)
Macrophage (3)
Stem cell (3)
Testis (3)
Whole body (3)
Permanent cell line cell (3)
Kidney (3)
B cell (3)
Colon (3)
T cell (3)
Kidney cell line (2)
Seedling (2)
Pancreas (2)
Seed (2)
Keratinocyte (2)
Embryonic stem cell (2)
Muscle (2)
Chondrocyte (2)
Ovary (2)
Plant cell (2)
Bone marrow (2)
Leukocyte (2)

Disease

Acute leukemia (4)
Wounds and Injuries (3)
Disease free (3)
Brain glioblastoma multiforme (2)
Melanoma (2)
Breast cancer (2)
Colon cancer (2)
Normal (1)
Gastric body carcinoma (1)
Wiskott-Aldrich syndrome (1)
Limb-girdle muscular dystrophy (1)
Synovial sarcoma (1)
Embryonal rhabdomyosarcoma (1)
Renal Wilms' tumor (1)
Uveal melanoma (1)
Castration-resistant prostate carcinoma (1)
Peripheral primitive neuroectodermal tumor (1)
Acute myocardial infarction (1)
Fibrolamellar carcinoma (1)
Non-alcoholic steatohepatitis (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Wilson disease (1)
Retinopathy of prematurity (1)
Malignant mesothelioma (1)
Chronic bronchitis (1)
Brain disease (1)
Stomach cancer (1)
Childhood extraosseous osteosarcoma (1)
Retinoblastoma (1)

Technology Type

Mass Spectrometry (125)
Shotgun proteomics (61)
Mass spectrometry (49)
Mass spectrometry assay (39)
Bottom-up proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (16)
Data-dependent acquisition (12)
Gel-based experiment (10)
SWATH MS (9)
Data-independent acquisition (7)
NMR spectroscopy (2)
Proteogenomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Metaproteomics (1)
Immunopeptidomics (1)
SRM/MRM (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (11)
NextSeq 500 (3)
Orbitrap Fusion Lumos (3)
Q Exactive Plus (3)
Illumina NovaSeq X (2)
Illumina HiSeq 2000 (2)
Q Exactive (2)
NEBNext rRNA Depletion Kit v2 and NEBNext Ultra II Directional RNA Library Prep Kit Illumina kits (1)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
Analyses performed on a Linux HPC cluster with Intel Xeon CPUs (1)
Agilent 4200 TapeStation; PCR thermal cycler (Applied Biosystems) (1)
Qubit Fluorometer 3.0 (Thermo Fisher Scientific, USA); Agilent 4200 TapeStation (Agilent Technologies, USA) (1)
S1000 Thermal Cycler (BioRad) (1)
SeekOne® Digital Droplet System (Seek Gene) (1)
BD FACSAria III cell sorter (BD Biosciences) (1)
TBS380 (1)
Nanodrop2000 (1)
Agilent Bioanalyzer (1)
Not applicable (1)
ScanArray 4000 [PerkinElmer] (1)
NA (1)
DNBSEQ-G400 (1)
Illumina HiSeq 1000 (1)
HiSeq X Ten (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 3000 (1)

Publication Date

2026 (57)
2025 (53)
2024 (37)
2022 (36)
2014 (36)
2021 (32)
2010 (30)
2023 (30)
2015 (21)
2013 (19)
2011 (16)
2019 (12)
2012 (9)
2020 (9)
2016 (6)
2018 (4)
2009 (3)
2017 (2)
2006 (2)
2008 (1)
2007 (1)
2004 (1)

UNIPROT ID/AC

O42363 (16)
E9QIH5 (16)
E9QH64 (16)
E9QFD8 (16)
E9QF07 (16)
E9QD59 (16)
E9QBF0 (16)
E7FES0 (16)
E7FD96 (16)
E7FD18 (16)
E7FCI8 (16)
E7FC32 (16)
E7FBA5 (16)
E7F354 (16)
E7EZL7 (16)
E7EZ16 (16)
E7EYX7 (16)
E7EXF4 (16)
D1GJ56 (16)
B8JLS3 (16)
B8JLJ3 (16)
B8JKN6 (16)
B8JJ23 (16)
B8JIS1 (16)
B8A516 (16)
B3DFS9 (16)
B3DFP9 (16)
B0UYN4 (16)
B0UXS6 (16)
B0S730 (16)

ENSEMBL ID

ENSDARP00000125163 (16)
ENSDARP00000123922 (16)
ENSDARP00000116010 (16)
ENSDARP00000097050 (16)
ENSDARP00000087462 (16)
ENSDARP00000061164 (16)
ENSDARP00000000221 (16)
ENSDARG00000092233 (16)
ENSDARG00000092126 (16)
ENSDARG00000087390 (16)
ENSDARG00000079782 (16)
ENSDARG00000079564 (16)
ENSDARG00000075758 (16)
ENSDARG00000074289 (16)
ENSDARG00000071430 (16)
ENSDARG00000070083 (16)
ENSDARG00000068992 (16)
ENSDARG00000063908 (16)
ENSDARG00000058371 (16)
ENSDARG00000058358 (16)
ENSDARG00000056248 (16)
ENSDARG00000055996 (16)
ENSDARG00000055649 (16)
ENSDARG00000051783 (16)
ENSDARG00000046106 (16)
ENSDARG00000045180 (16)
ENSDARG00000045143 (16)
ENSDARG00000045014 (16)
ENSDARG00000044976 (16)
ENSDARG00000044975 (16)

CHEBI ID

CHEBI:17368 (26)
CHEBI:17596 (24)
CHEBI:16335 (23)
CHEBI:16704 (23)
CHEBI:16919 (23)
CHEBI:17568 (22)
CHEBI:15891 (22)
CHEBI:16708 (21)
CHEBI:17562 (20)
CHEBI:16750 (20)
CHEBI:16235 (20)
CHEBI:17295 (20)
CHEBI:35581 (18)
CHEBI:16467 (18)
CHEBI:16015 (18)
CHEBI:30915 (18)
CHEBI:16393 (17)
CHEBI:17509 (17)
CHEBI:55328 (17)
CHEBI:30769 (17)
CHEBI:17533 (16)
CHEBI:17015 (16)
CHEBI:17154 (16)
CHEBI:16566 (16)
CHEBI:15971 (16)
CHEBI:32816 (16)
CHEBI:16737 (16)
CHEBI:16347 (16)
CHEBI:15756 (16)
CHEBI:17687 (16)

Metabolite Name

Hypoxanthine (30)
Adenosine (29)
Creatine (28)
Taurine (25)
Cytosine (24)
Adenine (24)
Uridine (24)
Inosine (24)
Cytidine (23)
Xanthine (22)
Guanosine (22)
Betaine (21)
Choline (21)
Guanine (21)
L-Tyrosine (21)
Pantothenic acid (20)
L-Tryptophan (20)
Creatinine (20)
L-Phenylalanine (20)
Uracil (19)
L-Arginine (19)
Indole (19)
Oleamide (19)
Genistein (17)
Histamine (17)
Riboflavin (17)
L-Glutamine (17)
Azelaic acid (17)
Thiamine (16)
Ornithine (16)

Study type

Transcription profiling by array (65)
RNA-seq of coding RNA (25)
ChIP-seq (23)
Other (9)
ChIP-chip by tiling array (5)
Comparative genomic hybridization by array (4)
RNA-seq of total RNA (3)
Cell line - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
Human - High-throughput sequencing (1)
ChIP-chip by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Hi-C (1)
RIP-seq (1)
Ribo-seq (1)
CUT&RUN (1)

Release Date

2025 (939)
2022 (782)
2024 (740)
2023 (736)
2021 (610)
2020 (410)
2019 (283)
2017 (218)
2018 (214)
2015 (168)
2016 (164)
2014 (130)
2026 (110)
2013 (76)
2012 (61)
2011 (40)
2010 (40)
2009 (23)
2008 (7)
2007 (3)
2006 (2)
2005 (2)
2002 (2)
2004 (1)
2003 (1)
2001 (1)

Lab affiliation

Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Department of Immunology, Interfaculty Institute for Cell Biology, Eberhard Karls University Tübingen (2)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (2)
Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (2)
Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College, 210042 Nanjing, China. (2)
Zhejiang University (2)
Johns Hopkins University (2)
., Department of Laboratory Medicine, Medical University of Vienna, 18-20 Währinger Gürtel, 1090 Vienna, Austria (1)
State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100037, China (1)
Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences (1)
Department of Integration of Chinese and Western Medicine, School of Basic Medicine Science, Peking University, China (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
Neuroimmunology and MS Research Section (NIMS), Neurology Clinic, University of Zurich, University Hospital Zurich, 8091 Zurich, Switzerland (1)
CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China (1)
Weizmann Institute of Science Israel (1)
Turku PET Centre, University of Turku, Turku, Finland Department of Endocrinology, Turku University Hospital, Turku, Finland (1)
Department of Allergy, Beijing Shijitan Hospital, Capital Medical University, Beijing, China. (1)
School of Medicine, College of Medicine, Fu Jen Catholic Univeristy, New Taipei City, Taiwan (1)
The Second Affiliated Hospital of Soochow University (1)
Department of Integration of Chinese and Western Medicine, School of Basic Medical Sciences, Peking University, 38 Xueyuan Road, Beijing 100191, People’s Republic of China (1)
UTHealth Houston, Texas, USA (1)
Department of Biochemistry, Monash University, Clayton,3168, Australia (1)
Institute of Reproductive Health, Tong Ji Medical College, Hua Zhong University of Science and Technology, Wuhan, China. (1)
College of Pharmacy, Jinan University, Guangzhou, China (1)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China (1)
Chengdu University of Traditional Chinese Medicine (1)
Guangdong Institute of Microbiology, Guangdong Academy of Sciences (1)
University of Oklahoma, Norman, OK, USA (1)
State Key Laboratory of Reproductive Medicine and China International Joint Research Center on Environment and Human Health, Nanjing Medical University (1)
College of Plant Protection, Anhui Agricultural University (1)

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Needle Adjustment Free (NAF) running suture technique (PAN suture) in laparoscopic partial nephrectomy.

Not available

S-EPMC7937216 | biostudies-literature

P. aeruginosa proteomics under the compound 7

We used the compond 7 developped by Jianwei Chen's group in P. aeruginosa under different concentrations (blank, 8*MIC and 16*MIC). Then we conducted the differential proteomics testing.

ORGANISM(S): Pseudomonas aeruginosa PAO1

2026-01-17 | PXD069942 | Pride

Deduced Conservation Strategy of the Macaques in China from their Evolutionary Development.

Not available

S-EPMC11659817 | biostudies-literature

Construction of Orthogonal Modular Proteinaceous Nanovaccine Delivery Vectors Based on mSA-Biotin Binding.

Not available

S-EPMC8911943 | biostudies-literature

Changes in gene expression induced by CDK9 inhibition alone and in combination with fludarabine

Using a transcriptomics approach we explored the mechanism(s) of synergy observed between CDKI-73 and fludarabine in primary CLL cells. The cytotoxic effects of CDKI-73 were associated with transcriptional inhibition of cdk9 target genes including MCL1 and XIAP. In contrast, fludarabine induced the ...

ORGANISM(S): Homo sapiens

2013-06-25 | E-GEOD-48258 | biostudies-arrayexpress

Proteomics of P.aeruginosa with compound 7

We have conducted proteomics of P. aeruginosa with and without compound 7 which was developped by Chen's group.

ORGANISM(S): Pseudomonas aeruginosa PAO1

2026-01-17 | PXD070105 | Pride

Compound 7 Proteomics P. aeruginosa

HDAC6 and HSP90 control the functions of Foxp3+ T regulatory cells

Foxp3+ T-regulatory cells (Tregs) are key to immune homeostasis such that their diminished numbers or function can cause autoimmunity and allograft rejection. Foxp3+ Tregs express histone/protein deacetylases (HDACs) that regulate chromatin remodeling, gene expression and protein function. Pan-HDAC ...

ORGANISM(S): Mus musculus

2011-05-01 | E-GEOD-27896 | biostudies-arrayexpress

Development of a pan-Babesia FRET-qPCR and a survey of livestock from five Caribbean islands.

Not available

S-EPMC4588467 | biostudies-literature

Role and mechanism of alpa1-antitrypsin in polycystic ovary syndrome.

Not available

S-EPMC9994513 | biostudies-literature

In situ sulfuration synthesis of flexible PAN-CuS "flowering branch" heterostructures as recyclable catalysts for dye degradation.

Not available

S-EPMC9091420 | biostudies-literature

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