Wang S K SK - OmicsDI

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Unknown (1264)
Genomics (88)
Transcriptomics (40)
Proteomics (36)
Metabolomics (7)

Organisms

Homo sapiens (110)
Caenorhabditis elegans (24)
Mus musculus (9)
Drosophila melanogaster (1)
Mus (1)
Plasmodium falciparum FcB1/Columbia (1)

Repository

biostudies-arrayexpress (66)
EGA (62)
PAXDB (15)
pride (13)
MetaboLights (7)
MassIVE (5)
iProX (2)
PanoramaPublic (1)

Tissue

Cell culture (5)
Brain (3)
Epithelial cell (2)
Lung (2)
B cell (1)
Bile (1)
Bile duct (1)
Blood (1)
Blood cell (1)
Blood plasma (1)
Blood serum (1)
Blood-lymph (1)
Bone marrow (1)
Colon (1)
Cortex (1)
Early embryonic cell (1)
Embryonic stem cell (1)
Fibroblast (1)
Kidney (1)
Liver (1)
Lymph node (1)
Muscle (1)
Pancreas (1)
Skin (1)

Disease

Acute leukemia (2)
"hepatocellular adenoma" (1)
Brain cancer (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Colon cancer (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Frontotemporal dementia (1)
Head and neck cancer (1)
Lung carcinoma (1)
Malignant mesothelioma (1)
Melanoma (1)
Neuroblastoma (1)
Pancreatic cancer (1)
Peripheral primitive neuroectodermal tumor (1)
Prostate adenocarcinoma (1)
Renal Wilms' tumor (1)
Retinoblastoma (1)
Stomach cancer (1)
Synovial sarcoma (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (13)
Shotgun proteomics (6)
Mass spectrometry (5)
Bottom-up proteomics (4)
NMR spectroscopy (3)
Illumina OncoArray (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
DiaPASEF (1)
Gel-based experiment (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
LTQ (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - positive - reverse phase (2)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
Bruker (1)
Gas Chromatography MS - positive (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2011 (29)
2014 (17)
2013 (9)
2012 (8)
2010 (6)
2025 (6)
2016 (4)
2021 (4)
2015 (3)
2007 (3)
2023 (3)
2022 (3)
2008 (2)
2006 (2)
2005 (2)
2017 (2)
2019 (2)
2024 (2)
2026 (1)
2020 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
7955.ENSDARP00000102749 (15)
7955.ENSDARP00000102775 (15)
7955.ENSDARP00000103208 (15)
7955.ENSDARP00000103318 (15)
7955.ENSDARP00000103819 (15)
7955.ENSDARP00000104168 (15)
7955.ENSDARP00000104379 (15)
7955.ENSDARP00000104630 (15)

CHEBI ID

CHEBI:15351 (2)
CHEBI:15428 (2)
CHEBI:15517 (2)
CHEBI:15676 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:16449 (2)
CHEBI:16668 (2)
CHEBI:16919 (2)
CHEBI:17234 (2)
CHEBI:17385 (2)
CHEBI:17443 (2)
CHEBI:17561 (2)
CHEBI:18012 (2)
CHEBI:18186 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:26078 (2)
CHEBI:26271 (2)
CHEBI:26986 (2)
CHEBI:27266 (2)
CHEBI:28300 (2)
CHEBI:30769 (2)
CHEBI:30772 (2)
CHEBI:30794 (2)
CHEBI:30915 (2)
CHEBI:46961 (2)
CHEBI:75457 (2)
CHEBI:10049 (1)
CHEBI:10093 (1)

Metabolite Name

Acetyl-CoA (2)
Butyryl-CoA (2)
(1'S,2R,2'R,10'S,11'S,15'S)-17'-hydroxy-2',15'-dimethylspiro[oxolane-2,14'-tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane]-6',8'-diene-5,5'-dione (1)
(1-{1-[(4-hydroxy-3-methoxyphenyl)methyl]-7,8-dimethoxy-2,2-dimethyl-1,2,3,4-tetrahydro-2λ⁵-isoquinolin-2-yl}ethylidene)-λ⁴-oxidanyliumyl (1)
(10,14a-dihydroxy-2,2,4a,6a,6b,9,9,12a-octamethyl-docosahydropicen-13-yl)oxidanesulfonic acid (1)
(10S,14S)-10,14,20-trimethyl-16-methylidene-22-azahexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²³.0¹⁷,²²]tetracosan-5-ylium-7-olate (1)
(12aR)-4-(dimethylamino)-4a,5,10,12a-tetrahydroxy-6-methylidene-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aR)-7-chloro-4-(dimethylamino)-4,6,10,12a-tetrahydroxy-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aS)-4,7-bis(dimethylamino)-10,12,12a-trihydroxy-1,3,11-trioxo-9-(2-oxoacetamido)-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (1)
(12aS)-9-{[2-(tert-butylamino)-1-hydroxyethylidene]amino}-4,7-bis(dimethylamino)-5,10,12,12a-tetrahydroxy-1,3,11-trioxo-1,2,3,4,4a,5,5a,6,11,12a-decahydrotetracene-2-carboximidic acid (1)
(13-{[5-(acetyloxy)-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,6,6,11,15-pentamethyl-14-(6-methylhept-5-en-2-yl)-5-[(3,4,5-trihydroxyoxan-2-yl)oxy]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl)oxidanesulfonic acid (1)
(13R)-5-(3,4-dihydroxyphenyl)-6,9,17,19,21-pentahydroxy-13-(4-hydroxyphenyl)-4,12,14-trioxapentacyclo[11.7.1.0²,¹¹.0³,⁸.0¹⁵,²⁰]henicosa-2(11),3(8),5,9,15,17,19-heptaen-7-one (1)
(15Z)-Octadec-15-en-9,11,13-triynoic acid (1)
(1R)-1,4-bis({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy})-3-hydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1R,16Z,24E,26E,28Z)-1,18,26,27-tetrahydroxy-19,30-dimethoxy-12-[1-(3-methoxy-4-oxocyclohexyl)propan-2-yl]-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,16Z,24E,26E,28Z)-1,18-dihydroxy-12-[1-(4-hydroxy-3-methoxycyclohexyl)propan-2-yl]-19,30-dimethoxy-15,17,21,23,29-pentamethyl-35-methylidene-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,2R,3R,11S,12S,14R,26R)-5,6',7',12-tetrahydroxy-6-methoxy-7,21,30-trimethyl-27-oxo-3',4'-dihydro-2'H-17,19,28-trioxa-24-thia-13,30-diazaspiro[heptacyclo[12.9.6.1³,¹¹.0²,¹³.0⁴,⁹.0¹⁵,²³.0¹⁶,²⁰]triacontane-26,1'-isoquinoline]-4(9),5,7,15(23),16(20),21-hexaen-22-yl acetate (1)
(1R,2S,3R,4R,5S,6R,7S)-1,3,4,5,7,8,9,10,10-Nonachlorotricyclo[5.2.1.0²,⁶]dec-8-ene (1)
(1R,6S,12R,15S)-5,5-Dimethyl-11,13-dioxatetracyclo[7.5.1.0¹,⁶.0¹²,¹⁵]pentadec-8-ene (1)
(1R,9S,18Z,24R)-12-[1-(4-chloro-3-hydroxycyclohexyl)prop-1-en-2-yl]-17-ethyl-1,14-dihydroxy-23,25-dimethoxy-13,19,21,27-tetramethyl-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone (1)
(1R,9S,18Z,24R)-12-[1-(4-chloro-3-methoxycyclohexyl)prop-1-en-2-yl]-17-ethyl-1,14-dihydroxy-13-(hydroxymethyl)-23,25-dimethoxy-19,21,27-trimethyl-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone (1)
(1S)-1,3,4-trihydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1S,16Z,24E,26E,28Z)-1,18-dihydroxy-12-{1-[4-(2-hydroxyethoxy)-3-methoxycyclohexyl]propan-2-yl}-15-(hydroxymethyl)-19,30-dimethoxy-17,21,23,29,35-pentamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1S,16Z,24E,26E,28Z)-1,18-dihydroxy-12-{1-[4-(2-hydroxyethoxy)-5-methoxy-2-oxocyclohexyl]propan-2-yl}-19,30-dimethoxy-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1S,2R,10S,11S,14R,15R)-2,15-Dimethyl-14-[(2R)-6-methylheptan-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-ene (1)
(1S,2S,10S,11S,15R)-14-(5,6-dimethylheptan-2-yl)-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,17-diol (1)
(1S,2S,5R,7R,10S,11S,14R,15S,17S)-14-[(1R)-1,2-Dihydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,14,17-triol (1)
(1S,2S,5S,10R,11S,14R,15R)-14-[(2R,5R)-5-Ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-ol (1)
(1S,2S,7S,10R,15R)-2,15-dimethyl-14-(1,4,6-trihydroxy-6-methylheptan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,9,16-triol (1)
(1S,5R,13R,17S)-15-[(1S,3S,5R,13R)-10,14-Dimethoxy-4-methyl-12-oxa-4-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,14,16-pentaen-3-yl]-17-hydroxy-10-methoxy-4-methyl-12-oxa-4-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,15-tetraen-14-one (1)

Study type

Transcription profiling by array (31)
ChIP-seq (25)
Unknown experiment type (3)
RNA-seq of coding RNA (3)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (147)
2024 (142)
2022 (132)
2023 (122)
2025 (113)
2020 (101)
2015 (73)
2019 (68)
2018 (67)
2016 (66)
2017 (60)
2011 (56)
2014 (45)
2013 (42)
2012 (31)
2010 (22)
2026 (17)
2009 (10)
2008 (7)
2007 (4)
2006 (2)
2005 (2)
2001 (1)

Lab affiliation

Associate Professor (1)
BBE, Caltech (1)
Bristol Myers Squibb (1)
COld Spring Harbor Laboratory (1)
Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Chemistry, Boston University, USA (1)
Evotec (München) GmbH (1)
Prof of Genetics Washington University in St. Louis (1)
Proteomics and Cancer Cell Signaling, DKFZ Heidelberg (1)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 (1)
Sequence database group (1)
University of Mississippi (1)
Weill Cornell Medical College, New York City (1)

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NMR based metabolomics study of Y2 receptor activation by neuropeptide Y in the SK-N-BE2 human neuroblastoma cell line

Neuropeptide Y (NPY) and its Y2 receptors (Y2R) play an important role in regulating growth of various tumors and are highly expressed in human neuroblastoma brain tumors. Cell lines derived from neuroblastoma brain tumors provide a good model to study the consequences of NPY activation of Y2R in tu...

2014-10-01 | MTBLS104 | MetaboLights

The vasorelaxant effect of H(2)S as a novel endogenous gaseous K(ATP) channel opener.

Not available

S-EPMC125693 | biostudies-literature

Different arrhythmia-associated calmodulin mutations have distinct effects on cardiac SK channel regulation.

Not available

S-EPMC7681919 | biostudies-literature

A Pathogenic Missense Mutation in Kainate Receptors Elevates Dendritic Excitability and Synaptic Integration through Dysregulation of SK Channels.

Not available

S-EPMC10669804 | biostudies-literature

Cardiac small conductance Ca2+-activated K+ channel subunits form heteromultimers via the coiled-coil domains in the C termini of the channels.

Not available

S-EPMC3732376 | biostudies-literature

Transcription profiling of dauer gene expression in Caenorhabditis elegans

These are the 94 microarray experiments that are published in the paper: John Wang and Stuart K. Kim. Global analysis of dauer gene expression in Caenorhabditis elegans, Development 2003 130: 1621-1634. There are 94 individual microarray experiments divided into 3 broad experiments. The first experi...

ORGANISM(S): Caenorhabditis elegans

2005-07-13 | E-SMDB-1964 | biostudies-arrayexpress

Deep proteomic and phosphoproteomic profiling of Rhabdoid tumor response to IDA/SEL therapy

Different Rhabdoid tumors have different responses to idasanultin/selinexor therapy, which can be identified by quantitative proteomics/phospho-proteomics approach

ORGANISM(S): Homo sapiens (Human)

2026-03-30 | PXD049344 | Pride

Metabolomic fingerprinting of bull spermatozoa for identification of fertility signature metabolites

The objective of the study was to identify the fertility-associated metabolites in bovine spermatozoa using liquid chromatography-mass spectrometry (LC-MS). Six Holstein Friesian crossbred bulls (three high-fertile and three low-fertile bulls) were the experimental animals. Sperm proteins were isola...

2021-12-07 | MTBLS1071 | MetaboLights

Selective and brain-penetrant lanosterol synthase inhibitors target glioma stem-like cells by activating a shunt pathway that generates the toxic metabolite 24(S),25-epoxycholesterol

LUM2_708738 - MM0299-probe bound protein; LUM2_708739 - MM0299 competition; LUM2_850369 - Ro-alkyne bound protein; LUM2_850370 - Ro 48-8071 competition

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2023-01-11 | MSV000091046 | MassIVE

Gene expression profiling of novel antigen presenting cells (APC) inducing pathogenic T helper cells of lupus

In lupus autoimmunity, pathogenic IgG autoantibodies that fix complement and bind FcGammaR on inflammatory cells, are produced with help from T helper (Th1 and Th17) cells specific for peptides from nucleosomes of apoptotic cells; and these Th cells also infiltrate vital organs (1-9). Macrophages (...

ORGANISM(S): Mus musculus

2012-06-20 | E-GEOD-36284 | biostudies-arrayexpress

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