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ProteomicsReanalysis of dataset PXD020692: “Washington state shellfish hatchery microbiome”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD020692. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): marine metagenome 
2023-11-03 | PXD038539 | Pride
Data integration Metaproteomics Reanalysis 
ProteomicsReanalysis of dataset PXD005780: “Relating human gut metagenome and metaproteome”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD005780. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): human gut metagenome 
2022-05-04 | PXD032303 | Pride
Data integration Metaproteomics Reanalysis 
ProteomicsReanalysis of dataset PXD003791: “MuSt multiomics - Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD003791. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): Homo sapiens (Human) 
2022-06-17 | PXD034617 | Pride
Data integration Metaproteomics Reanalysis 
ProteomicsFusobacterium nucleatum Promotes PD-L1 Expression in Macrophages by Inducing Exosomal lncRNA MANCR from Colorectal Cancer Cells
This mass spectrometry dataset was generated from RNA pull-down assays to identify proteins interacting with lncRNA MANCR in colorectal cancer cells (HCT116) and macrophages (THP-1)
ORGANISM(S): Homo Sapiens 
2026-01-04 | PXD072638 |
ProteomicsTranslation control by maternal Nanog promotes oocyte maturation and early embryonic development
proteomes of nanog mutant eggs with WT were quantitatively compared using isobaric tags for relative and absolute quantitation (iTRAQ) technology
ORGANISM(S): Danio Rerio 
PXD036250 |
ProteomicsLC-MS/MS proteomic analysis of candidate BATF2-binding proteins
Label-free Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS) proteomic analysis of candidate BATF2-binding proteins
ORGANISM(S): Homo Sapiens 
PXD037788 |
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