Wang Shi S - OmicsDI

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Unknown (10494)
Proteomics (396)
Transcriptomics (109)
Metabolomics (57)
Genomics (22)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (257)
Mus musculus (40)
Rattus norvegicus (6)
Saccharomyces cerevisiae (6)
Oryza sativa (4)
Caenorhabditis elegans (2)
Gallus gallus (2)
Danio rerio (2)
Macaca mulatta (2)
Arabidopsis thaliana (2)
Bos taurus (2)
Larimichthys crocea (1)
Myotis davidii (1)
Pteropus alecto (1)
Bos grunniens (1)
Brassica oleracea (1)
Arachis hypogaea (1)
Bemisia tabaci (1)
Lilium longiflorum (1)
Zika virus (1)
Prunus persica (1)
Neurospora crassa (1)
Oryza sativa Indica Group (1)
Vitis vinifera (1)
Staphylococcus aureus (1)
Setaria italica (1)
Solanum lycopersicum (1)
Ovis aries (1)
Oryza sativa Japonica Group (1)
Drosophila melanogaster (1)

Repository

PeptideAtlas (158)
pride (135)
biostudies-arrayexpress (123)
iProX (80)
MetaboLights (55)
MassIVE (19)
EGA (8)
GNPS (2)
jPOST (2)
dbGaP (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Digestive System (95)
Liver (44)
Cell culture (39)
Colonic cancer cell (11)
Liver (10)
Rectal cancer cell (10)
Epithelial cell (8)
Testis (7)
Leaf (5)
Lung (5)
Hepatocyte (4)
Permanent cell line cell (4)
Sperm (4)
Whole body (4)
Others (3)
Heart (3)
Stem cell (3)
Plasma Non-glyco (2)
B cell (2)
Blood plasma (2)
Cell suspension culture (2)
Gastric adenocarcinoma cell (2)
HeLa cell (2)
Macrophage (2)
Oocyte (2)
Pancreas (2)
Photosynthetic cell (2)
Prostate gland (2)
Root (2)
T cell (2)

Disease

Colon adenocarcinoma (10)
Rectum adenocarcinoma (10)
Breast cancer (3)
Brain glioblastoma multiforme (2)
Disease free (2)
Hepatocellular carcinoma (2)
Liver cancer (2)
Pancreatic ductal adenocarcinoma (2)
Endometrioid carcinoma (1)
Acute leukemia (1)
COVID-19 (1)
Chronic kidney disease (1)
Colon cancer (1)
Eosinophilic esophagitis (1)
Gastric adenocarcinoma (1)
Gastric ulcer (1)
Leukemia (1)
Lung cancer (1)
Lung carcinoma in situ (1)
Malignant neoplasm of ovary (1)
Neck carcinoma (1)
Osteosarcoma (1)
Prion disease (1)
Prostate adenocarcinoma (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (135)
Shotgun proteomics (80)
Mass spectrometry (48)
Bottom-up proteomics (22)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-dependent acquisition (9)
Gel-based experiment (7)
Mass spectrometry assay (6)
Data-independent acquisition (5)
SWATH MS (5)
Top-down proteomics (4)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina OncoArray (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Mass spectrometry imaging (1)
Proteogenomics (1)

Instrument Platform

LTQ Orbitrap Velos (107)
Liquid Chromatography MS - positive - reverse phase (28)
Liquid Chromatography MS - negative - reverse phase (20)
Liquid Chromatography MS - negative - hilic (8)
Q Exactive (5)
Liquid Chromatography MS - positive - hilic (5)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - positive (3)
Tandem Gas Chromatography MS - (2)
Tandem Gas Chromatography MS - positive (2)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - negative (2)
Affymetrix Array scanner (1)
Affymetrix hybridization station (1)
HiSeq X Ten (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ XL (1)
TSQ Quantiva (1)
6550 Q-TOF LC-MS Agilent (1)
Agilent 7890 (1)
TSQ Quantum GC (Thermo Scientific) (1)
Liquid Chromatography MS - alternating – hilic (1)

Publication Date

2014 (123)
2021 (44)
2023 (41)
2025 (37)
2022 (32)
2015 (28)
2024 (25)
2013 (21)
2016 (17)
2012 (17)
2019 (16)
2026 (15)
2010 (12)
2020 (12)
2018 (12)
2011 (9)
2017 (8)
2007 (3)
2006 (3)
2005 (3)
2004 (3)
2009 (2)
2002 (1)
2001 (1)

UNIPROT ID/AC

2711.XP_006464469.1 (1)
2711.XP_006464485.1 (1)
2711.XP_006464486.1 (1)
2711.XP_006465039.1 (1)
2711.XP_006465481.1 (1)
2711.XP_006465554.1 (1)
2711.XP_006465598.1 (1)
2711.XP_006465717.1 (1)
2711.XP_006465764.1 (1)
2711.XP_006466032.1 (1)
2711.XP_006466189.1 (1)
2711.XP_006466240.1 (1)
2711.XP_006466243.1 (1)
2711.XP_006466346.1 (1)
2711.XP_006466347.1 (1)
2711.XP_006466348.1 (1)
2711.XP_006466352.1 (1)
2711.XP_006466586.1 (1)
2711.XP_006467060.1 (1)
2711.XP_006467330.1 (1)
2711.XP_006467511.1 (1)
2711.XP_006468195.1 (1)
2711.XP_006468459.1 (1)
2711.XP_006468477.1 (1)
2711.XP_006468930.1 (1)
2711.XP_006468931.1 (1)
2711.XP_006469038.1 (1)
2711.XP_006469071.1 (1)
2711.XP_006469105.1 (1)
2711.XP_006469136.1 (1)

ENSEMBL ID

ENSG00000170477 (99)
ENSG00000229353 (47)
ENSG00000147251 (18)
ENSG00000176092 (2)
ENSG00000247315 (1)

CHEBI ID

CHEBI:17568 (18)
CHEBI:17596 (17)
CHEBI:30769 (17)
CHEBI:17154 (16)
CHEBI:17509 (16)
CHEBI:16704 (16)
CHEBI:15756 (16)
CHEBI:17351 (16)
CHEBI:17368 (16)
CHEBI:16359 (15)
CHEBI:16027 (15)
CHEBI:16040 (14)
CHEBI:15891 (14)
CHEBI:32816 (14)
CHEBI:17533 (13)
CHEBI:16708 (13)
CHEBI:28875 (13)
CHEBI:28842 (13)
CHEBI:15741 (13)
CHEBI:16196 (13)
CHEBI:16335 (13)
CHEBI:18012 (13)
CHEBI:28865 (13)
CHEBI:30805 (12)
CHEBI:16750 (12)
CHEBI:16610 (12)
CHEBI:17015 (12)
CHEBI:17821 (12)
CHEBI:16235 (12)
CHEBI:24813 (12)

Metabolite Name

Cholic acid (12)
Uridine (12)
L-Tyrosine (11)
Uracil (10)
Guanine (10)
Inosine (10)
Thymidine (9)
Creatine (9)
Hypoxanthine (9)
L-Histidine (8)
Taurine (8)
12-Hydroxydodecanoic acid (8)
Adenosine (8)
Spermidine (8)
Palmitic acid (8)
L-Tryptophan (8)
Xanthine (8)
Guanosine (8)
L-Phenylalanine (8)
D-Glucose (7)
Genistein (7)
L-Proline (7)
L-Malic acid (7)
Kynurenic acid (7)
Nicotinamide (7)
Taurocholic acid (7)
Deoxycholic acid (7)
Salicylic acid (7)
Riboflavin (7)
Creatinine (7)

Study type

Transcription profiling by array (47)
RNA-seq of coding RNA (31)
ChIP-seq (10)
Comparative genomic hybridization by array (7)
Other (6)
ChIP-chip by tiling array (4)
Methylation profiling by high throughput sequencing (4)
RNA-seq of non coding RNA (3)
Transcription profiling by SAGE (2)
Genotyping by array (2)
Cell line - Single-cell sequencing (1)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by array (1)

Release Date

2025 (1758)
2022 (1429)
2023 (1336)
2024 (1307)
2021 (1127)
2020 (810)
2019 (571)
2018 (477)
2017 (388)
2016 (298)
2026 (262)
2015 (254)
2014 (197)
2013 (119)
2012 (93)
2011 (74)
2010 (50)
2009 (22)
2008 (13)
2007 (11)
2006 (8)
2005 (6)
2004 (6)
2003 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Vanderbilt University (10)
Agronomy College, Henan Agricultural University, China (3)
Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China (2)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (2)
Department of Clinical Pharmacy, University of Michigan (2)
Nanjing Medical University (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
School of Life Science, Fudan University (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Stowers Institute for Medical Research (2)
Sun Yat-sen University (2)
Zhejiang University (2)
college of pharmacy, Nankai university,Tianjin, 300353, China (2)
westlake.edu.cn (2)
1 School of Life Sciences, Beijing University of Chinese Medicine, Beijing, China.2 Shenzhen Research Institute, Beijing University of Chinese Medicine, Shenzhen, China. (1)
1. Garvan Institute of Medical Research, Cancer Ecosystems Program, and The Kinghorn Cancer Centre, Darlinghurst, Sydney, New South Wales, Australia. 2. School of Clinical Medicine, Faculty of Medicine and Health, University of New South Wales (UNSW), Kensington, Sydney, New South Wales, Australia. (1)
Affiliated Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Anhui Medical University (1)
Baylor College of Medicine (1)
Beijing Key Laboratory of DNA Damage Response and College of Life Science, Capital Normal University, Beijing 100048, China (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Boston Children's Hospital | Harvard Medical School (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences,Guangzhou, China (1)
Cancer Research Institute and School of Basic Medicine Sciences, Central South University, Changsha, Hunan, China (1)
Capital institute of Pediatrics. (1)
Center for Infectious Diseases Research Department of Pathology and Genomic Medicine Houston Methodist Research Institute USA (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)

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Three new species of the planthopper genus Sinonissus Wang, Shi & Bourgoin, 2018 from southwest China (Hemiptera, Fulgoromorpha, Issidae).

Not available

S-EPMC6694069 | biostudies-literature

First description of the female and morphological variation of Achalinushunanensis Ma, Shi, Xiang, Shu & Jiang, 2023 (Serpentes, Xenodermidae), with range extension of this species and A.yunkaiensis Wang, Li & Wang, 2019.

Not available

S-EPMC11851076 | biostudies-literature

Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

Sex-specific transcriptional signatures in the medial prefrontal cortex underlying sexually dimorphic behavioural responses to stress in rats.

Not available

S-EPMC9943549 | biostudies-literature

Three new species of Macrostomum (Platyhelminthes, Macrostomorpha) from China and Australia, with notes on taxonomy and phylogenetics.

Not available

S-EPMC9848920 | biostudies-literature

Identification of regulators of polyploidization presents therapeutic targetsfor treatment of AMKL

Wen Q, Goldenson B, Silver SJ, Schenone M, Dancik V, Huang Z, Wang LZ, Lewis TA, An WF, Li X, Bray MA, Thiollier C, Diebold L, Gilles L, Vokes MS, Moore CB, Bliss-Moreau M, Verplank L, Tolliday NJ, Mishra R, Vemula S, Shi J, Wei L, Kapur R, Lopez CK, Gerby B, Ballerini P, Pflumio F, Gilliland DG, Go...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2014-01-27 | MSV000078536 | MassIVE

Network Pharmacology-Based Analysis on the Effects and Mechanism of the Wang-Bi Capsule for Rheumatoid Arthritis and Osteoarthritis.

Not available

S-EPMC8908527 | biostudies-literature

Production of chain-extended cinnamoyl compounds by overexpressing two adjacent cluster-situated LuxR regulators in Streptomyces globisporus C-1027

Natural products from microorganisms are important sources for drug discovery. With the development of high-throughput sequencing technology and bioinformatics, a large amount of uncharacterized biosynthetic gene clusters (BGCs) in microorganisms have been found, which show the potential for nove...

2023-09-06 | MTBLS5152 | MetaboLights

Genome-wide characterization of the SHORT INTER-NODES/STYLISH and Shi-Related Sequence family in Gossypium hirsutum and functional identification of GhSRS21 under salt stress.

Not available

S-EPMC9846857 | biostudies-literature

Factors of the HIV Transmission in Men Who Have Sex with Men in Suizhou City from 2009 to 2013.

Not available

S-EPMC4380911 | biostudies-literature