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ProteomicsProteomic analyses reveal metabolic responses to 3-hydroxypropionic acid synthesized internally in Synechocystis sp. PCC 6803
Using an engineered 3-HP producing SM strain, in this project, the cellular responses to 3-HP internally produced were first determined using a quantitative iTRAQ-LC-MS/MS proteomics approach. A total of 2,264 unique proteins were identified, which represented about 63% of all predicted protein in S...
ORGANISM(S): Synechococcus cyanophage syn 
2016-09-26 | PXD004974 | Pride
Synechocystis 3-hp Proteomics 
ProteomicsA transcriptional regulator Sll0794 regulates tolerance to biofuel ethanol in photosynthetic Synechocystis sp. PCC 6803
To improve ethanol production directly from CO2 in photosynthetic cyanobacterial systems, one key issue that needs to be addressed is the low ethanol tolerance of cyanobacterial cells. Our previous proteomic and transcriptomic analyses found that several regulatory proteins were up regulated by exog...
ORGANISM(S): Synechocystis sp. PCC 6803 
2014-09-26 | PXD001266 | Pride
Transcriptional regulator  ethanol  tolerance  synechocystis 
ProteomicsRewiring the metabolic network to increase docosahexaenoic acid productivity in Crypthecodinium cohnii by fermentation supernatant-based adaptive laboratory evolution
To overcome the inhibition caused by the fermentation supernatant in the late fermentation stage of docosahexaenoic acid (DHA)-producing Crypthecodinium cohnii, fermentation supernatant-based adaptive laboratory evolution (FS-ALE) was conducted. The cell growth and DHA productivity of the evolved st...
ORGANISM(S): Crypthecodinium Cohnii 
2021-11-27 | PXD030028 |
OtherA transcriptional regulator Sll0794 regulates tolerance to biofuel ethanol in photosynthetic Synechocystis sp. PCC 6803.
Data from ProteomeXchange, PXD ID: PXD001266. File: zao-07.mgf. Published as part of Mol Cell Proteomics. 2014 Sep 19 . From the Abstract: {{i}} To improve ethanol production directly from CO2 in photosynthetic cyanobacterial systems, one key issue that needs to be addressed is the low ethanol tole...
ORGANISM(S): Synechococcus_phage_p60_uid14628,synechococcus_phage_syn5_uid19763,synechococcus_phage_syn9_uid17541,synechococcus_phage_s_pm2_uid15223,synechococcus_phage_s_rsm4_uid39923, Synechocystis_sp_pcc_6803 
GPM32310004118 | GPMDB
Resource Reanalysis 
TranscriptomicsComparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018
Transcriptomic profiling of gene expression in EA 2018 relative to that of ATCC824 revealed several key genes related to solvent formation. For example, spo0A and adhEII have higher expression level, and most of the acid formation related genes have lower expression level in EA 2018. Cells for RNA ...
ORGANISM(S): Clostridium acetobutylicum EA 2018 
2012-07-22 | E-GEOD-23071 | biostudies-arrayexpress
TranscriptomicsResponsive genes upon deletion of the ohkA gene in Streptomyces coelicolor M145
Transcription profile analysis between the wild-type strain M145 and the ohkA-deletion mutant to determine the overall transcription changes caused by the deletion of orphan histidine kinase gene ohkA in S.coelicolor. Transcription changes between the ohkA mutant and the wild-type strain M145 were p...
ORGANISM(S): Streptomyces coelicolor A3(2) 
2011-01-05 | E-GEOD-26426 | biostudies-arrayexpress
TranscriptomicsDetection of hypermethylated circulating serum DNA in metastatic breast cancer and confirmation by the cMethDNA assay
The ability to consistently detect cell-free tumor-specific DNA in peripheral blood of patients with metastatic breast cancer provides the opportunity to detect changes in tumor burden and to monitor response to treatment. We developed cMethDNA, a quantitative multiplexed methylation specific PCR as...
ORGANISM(S): Homo sapiens 
2014-03-01 | E-GEOD-52621 | biostudies-arrayexpress
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