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ProteomicsHepG2 HLA-I immunopeptidome by immunoprecipitation
This study utilized mass spectrometry-based proteogenomic profiling to identify the HLA-I immunopeptidome enriched from HepG2 cell. HepG2 WES-based and the COSMIC-based mutation database were generated and utilized to identify HepG2-specific mutant immunopeptides
ORGANISM(S): Homo Sapiens 
2023-09-07 | PXD045203 |
ProteomicsProteomics Profiles of the placenta Reveal the fetal calf growth-Related Candidate Biomarkers of Shandong black cattle
The placenta is a dynamic reproductive organ for cattle reproduction and is indispensable for embryonic blood supply, nutrition transportation, and fetal calf development, and it directly affects the development of fetal calf in utero. However, the detailed molecular mechanism of placenta act on fet...
ORGANISM(S): Bos taurus (Bovine) 
2025-05-06 | PXD043483 | Pride
Proteomics Cattle Placenta Dia 
ProteomicsAccurate identification of proteogenomic characterization in Mycolicibacterium smegmatis MC2155 by 14N and 15N double-labeling mass spectra
To achieve deep coverage of M. smegmatis proteome, 240 μg proteins were reduced with 5 mM of dithiothreitol (DTT), alkylated with 20 mM of iodoacetamide (IAA). The alkylated proteins were separated by a 10% SDS-PAGE for 8 cm, and stained with Coomassie Blue G250. Gel lane was excised into 13 fractio...
ORGANISM(S): Mycolicibacterium Smegmatis Mc2 155 
2022-09-29 | PXD037081 |
ProteomicsDRUSP_A novel method of super-enhanced purification of ubiquitinome
A novel approach that combines Denatured-Refolded Ubiquitinated Sample Preparation (DRUSP) with a tandem hybrid specific UBD (ThUBD) for ubiquitinomic analysis.
ORGANISM(S): Mus Musculus 
2024-08-28 | PXD055428 |
ProteomicsProteomics and phosphoproteomics reveal dysregulated kinases and associated pathway in liver fibrosis
Liver fibrosis is the initial stage of most liver diseases, and it is also a pathological process involving the liver in the late stages of many metabolic diseases. Therefore, it is important to systematically understand the pathological mechanism of liver fibrosis and seek therapeutic approaches fo...
ORGANISM(S): Mus Musculus 
2025-01-16 | PXD059906 |
ProteomicsAcellular Nerve Perineurium Repairs Peripheral Nerve Injuries in a Rat Model via ECM-Mediated Barrier and Optimization of the Regenerative Microenvironment: Raw date of the proteomics analysis in this study
The project IPX0014571000 in iProX as an example dataset, which is composed of the raw data and analysis results of the study paper"Acellular Nerve Perineurium Repairs Peripheral Nerve Injuries in a Rat Model via ECM-Mediated Barrier and Optimization of the Regenerative Microenvironment".
ORGANISM(S): Rattus Norvegicus Canis Lupus Familiaris 
2025-12-17 | PXD071986 |
ProteomicsPhosphoproteomics attributes aberrant signaling events to a druggable kinome in hepatocellular carcinom
To connect aberrant phospho-signaling events to therapeutic vulnerabilities in hepatocellular carcinoma (HCC), we performed a mass-spectrometry-based phosphoproteomic quantification of human HCC tumors, adjacent tissues and cell lines. We developed an integrated pipeline as the inference of druggabl...
ORGANISM(S): Homo Sapiens 
2023-01-02 | PXD023840 |
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