Wash - OmicsDI

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Transcriptomics (9228)
Proteomics (4452)
Unknown (2877)
Genomics (1504)
Metabolomics (180)
Other (13)
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Models (2)
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Organisms

Homo sapiens (3147)
Mus musculus (2058)
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Organisms

Homo sapiens (215)
Mus musculus (180)
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human nasopharyngeal metagenome (18)
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Mus (3)
soil metagenome (3)
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respiratory tract metagenome (2)
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phyllosphere metagenome (2)
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human skin metagenome (2)
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Xenopus laevis (2)
Vibrio cholerae (2)
human oral metagenome (2)
Canis lupus familiaris (2)
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bioreactor metagenome (2)

Repository

biostudies-arrayexpress (9962)
pride (4356)
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geo (101)
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Technology Type

Mass Spectrometry (4359)
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Data-dependent acquisition (571)
Data-independent acquisition (351)
Gel-based experiment (271)
SWATH MS (138)
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Chemical cross-linking coupled with mass spectrometry proteomics (81)
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DiaPASEF (42)
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Metaproteomics (6)
Proteogenomics (6)
Glycoproteomics (4)
RNA mass spectrometry (4)
EI (3)
SomaScan affinity proteomics (2)
Fluorescence imaging (1)
Fluorescence intensity (1)
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Instrument Platform

Illumina NovaSeq 6000 (105)
NextSeq 500 (90)
Illumina HiSeq 2000 (64)
Illumina HiSeq 2500 (48)
Illumina HiSeq 4000 (41)
Axon GenePix 4000B scanning hardware (40)
NextSeq 550 (32)
Scanning hardware (25)
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GenePix 4000B [Axon Instruments] (22)
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G2565BA DNA microarray scanner [Agilent] (16)
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GenePix 4000A [Axon Instruments] (13)
ScanArray Express HT [PerkinElmer] (12)
Illumina NovaSeq X (10)
GenePix Personal 4100A [Axon Instruments] (9)
Other (9)
Variable Atmosphere Incubator (9)
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G2565AA DNA microarray scanner [Agilent] (8)
Illumina Genome Analyzer IIx (8)
BGISEQ-500 (8)
Illumina HiSeq 1500 (8)
Spectronic Helios Alpha UV-Vis spectrophotometer (7)
Bioanalyser (7)

Publication Date

2013 (1610)
2010 (1184)
2014 (1141)
2011 (1121)
2012 (1023)
2015 (997)
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2016 (699)
2024 (664)
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2007 (281)
2018 (266)
2005 (196)
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2006 (169)
2004 (64)
2003 (15)
2002 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WWK8 (2)
A0A087WXI0 (2)
A0A0A0MR66 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0A0C4DGT3 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0JNW5 (2)
A0MZ66 (2)
A1A4S6 (2)
A1KXE4 (2)
A1L0T0 (2)
A1L170 (2)
A1L390 (2)
A1XBS5 (2)
A2AJT9 (2)
A2BFH1 (2)
A2RRP1 (2)
A2RU67 (2)
A2RUS2 (2)
A3KN83 (2)
A4D1P6 (2)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000147251 (1)

CHEBI ID

CHEBI:30769 (38)
CHEBI:15741 (29)
CHEBI:15428 (28)
CHEBI:32816 (26)
CHEBI:16015 (26)
CHEBI:16335 (26)
CHEBI:16708 (24)
CHEBI:16704 (24)
CHEBI:6650 (24)
CHEBI:17268 (24)
CHEBI:30915 (24)
CHEBI:15603 (24)
CHEBI:17895 (24)
CHEBI:16828 (24)
CHEBI:16857 (23)
CHEBI:16027 (23)
CHEBI:17295 (23)
CHEBI:15756 (23)
CHEBI:15971 (22)
CHEBI:18012 (22)
CHEBI:17596 (22)
CHEBI:17368 (22)
CHEBI:16958 (21)
CHEBI:17115 (21)
CHEBI:18050 (21)
CHEBI:16695 (21)
CHEBI:17562 (21)
CHEBI:16737 (21)
CHEBI:16919 (21)
CHEBI:17191 (21)

Metabolite Name

Adenine (22)
Hypoxanthine (20)
Adenosine (19)
Citric acid (18)
L-Phenylalanine (18)
Inosine (18)
L-Tyrosine (17)
Creatinine (16)
Creatine (16)
Guanine (15)
Cytosine (15)
Guanosine (15)
Glycine (14)
Uracil (14)
ADP (14)
L-Threonine (14)
L-Histidine (14)
Succinic acid (14)
D-Glucose (14)
Uridine (14)
L-Leucine (14)
AMP (13)
L-Asparagine (13)
Choline (13)
L-Proline (13)
Palmitic acid (13)
L-Tryptophan (13)
L-Glutamine (13)
L-Methionine (13)
Leucine (12)

First Public Date

2014 (128)
2024 (92)
2025 (84)
2022 (68)
2023 (59)
2026 (54)
2017 (52)
2021 (48)
2019 (38)
2020 (36)
2015 (26)
2013 (24)
2018 (21)
2016 (14)
2011 (1)

Modelling Approach

Ordinary differential equation model (2)

Study status

Completed (6)
Recruiting (2)
Terminated (1)
Active, not recruiting (1)

Lab affiliation

Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (22)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (19)
North Carolina State University (17)
UCSF (16)
Department of Chemistry & Chemical Biology, Northeastern University (15)
IRCCS Istituto G Gaslini (13)
Carnegie Mass Spectrometry Facility (12)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (12)
University of Edinburgh (12)
The University of Melbourne (11)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (10)
Northeastern University (10)
Cambridge Institute for Medical Research, University of Cambridge (9)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (9)
Head of the Curie Institute Mass Spectrometry Platform (9)
School of Life Sciences, University of Warwick (9)
Bioplatforms Australia (8)
Department Biochemistry of Plant Interactions, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany (8)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (8)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (7)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (7)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (7)
Head of Proteomics (7)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (7)
Utrecht University (7)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (7)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (6)
Department of Microbiology and Immunology, The University of Melbourne, Victoria, Australia (6)
Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (6)

Keyword

Comorbidity (1)

IsPrivate

False (2)

Classification

bacteria (21)
helminths (1)
viruses (1)
fungi (1)

Modification

4x(15)N labeled L-arginine (10)
15.994915 (9)
4-tetrahydrothiazine-3-carboxylic acid (9)
-17.026549 (8)
2x(15)N labeled L-lysine (8)
42.010565 (7)
57.021464 (7)
58.005479 (3)
79.966331 (3)
N6 (3)
N6-dimethyl-L-lysine (3)
+3amu) (2)
-18.010565 (2)
45.029395 (2)
10.008269 (1)
1x(15)N labeled L-leucine (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4'-dihydroxyphenylalanine (1)
47.036105 (1)
56.026215 (1)
59.036279 (1)
6.020129 (1)
Not available (1)

Study type

Transcription profiling by array (7090)
ChIP-seq (674)
ChIP-chip by tiling array (618)
Comparative genomic hybridization by array (271)
RNA-seq of coding RNA (261)
ChIP-chip by array (148)
Transcription profiling by tiling array (116)
Unknown experiment type (92)
Other (85)
Methylation profiling by array (81)
RNA-seq of coding RNA from single cells (57)
RNA-seq of non coding RNA (57)
MicroRNA profiling by array (55)
DNA-seq (29)
Proteomic profiling by array (28)
CUT&RUN (26)
RIP-seq (17)
Methylation profiling by high throughput sequencing (17)
RNA-seq of total RNA (16)
RNAi profiling by array (15)
ATAC-seq (14)
Cell line - One-color microarray (13)
High-throughput sequencing (13)
Single nucleus RNA sequencing (11)
Hi-C (10)
Human - One-color microarray (9)
Genotyping by array (8)
Animal - One-color microarray (7)
Animal - High-throughput sequencing (7)
One-color microarray (6)

Release Date

2013 (1655)
2010 (1201)
2014 (1181)
2011 (1143)
2012 (1054)
2015 (1028)
2016 (735)
2009 (468)
2022 (463)
2008 (441)
2021 (383)
2023 (376)
2025 (363)
2024 (349)
2020 (323)
2007 (293)
2018 (282)
2019 (274)
2017 (250)
2005 (195)
2006 (170)
2026 (127)
2004 (65)
2003 (15)
2002 (1)
1997 (1)
1978 (1)

Location

Australia (5)
New Zealand (1)
China (1)
Germany (1)
United States (1)

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Expression analysis of WASH knockout LT-HSC cells

Investigation of whole genome gene expression level changes in WASH knockout LT-HSCs, compared to the WASH WT strain. To find the reason that causes LT-HSC abnormal. Gene expression profiling using sorted LT-HSC samples from C57/BL6 strain. Total RNA extracted from WASH control (isolated RNA fr...

ORGANISM(S): Mus musculus

2014-05-17 | E-GEOD-57741 | biostudies-arrayexpress

post-wash metatranscriptomics project

PRJEB45608 | ENA

Institutional capacity assessment in the lens of implementation research: Capacity of the local institutions in delivering WASH services at Cox's Bazar district, Bangladesh.

Not available

S-EPMC10863886 | biostudies-literature

Expression analysis of WASH knockout LT-HSC cells

Investigation of whole genome gene expression level changes in WASH knockout LT-HSCs, compared to the WASH WT strain. To find the reason that causes LT-HSC abnormal.

ORGANISM(S): Mus musculus

2014-05-17 | GSE57741 | GEO

Wash regulates lamin-dependent nuclear genome organization [DamID]

The cytoplasmic functions of Wiskott-Aldrich Syndrome family (WASP) proteins are well known and include roles in cytoskeleton reorganization and membrane-cytoskeletal interactions important for membrane/vesicle trafficking, morphogenesis, immune response and signal transduction. Mis-regulation of th...

ORGANISM(S): Drosophila melanogaster

2015-03-10 | GSE59853 | GEO

Determining the wash solution to use

We tested a new wash solution from Agilent Keywords: Agilent microarray, pooling, Drosophila, intact adults

ORGANISM(S): Drosophila melanogaster

2007-06-18 | GSE5182 | GEO

WASH pulldown proteomics analysis

Affinity pulldown-paired quantitative proteomic analysis of HA-YFP-NLS.WASH interactors.

ORGANISM(S): Homo sapiens (Human)

2022-02-17 | PXD026512 | Pride

Wash regulates lamin-dependent nuclear genome organization [Chromatin Accessibility]

ORGANISM(S): Drosophila melanogaster

2015-03-10 | GSE59852 | GEO

TIDieR-WASH: A Guideline for Reporting Implementation of Water, Sanitation, and Hygiene Interventions.

Not available

S-EPMC11604158 | biostudies-literature

Determining the wash solution to use

We tested a new wash solution from Agilent Keywords: Agilent microarray, pooling, Drosophila, intact adults Intact males and females for a single genotype were examined. Two independent replicates of each were compared on two slides in a dye flip.

ORGANISM(S): Drosophila melanogaster

2010-06-10 | E-GEOD-5182 | biostudies-arrayexpress

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