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MetabolomicsMetabolomic Characterization of Knock-Out Mutants in Arabidopsis - Development of a Metabolite Profiling Database for Knock-Out Mutants in Arabidopsis (MeKO)
Despite recent intensive research efforts in functional genomics, the functions of only a limited number of Arabidopsis (Arabidopsis thaliana) genes have been determined experimentally. Thus, improving gene annotation remains a major challenge in plant science. Because metabolite profiling can chara...
2014-03-01 | MTBLS47 | MetaboLights
TranscriptomicsThe purine metabolite allantoin enhances abiotic stress tolerance through synergistic activation of abscisic acid metabolism
Purine catabolism is regarded as a housekeeping function that remobilizes nitrogen for plant growth and development. However, emerging evidence suggests that certain purine metabolites might contribute to stress protection of plants. Here, we show that in Arabidopsis, the intermediary metabolite all...
ORGANISM(S): Arabidopsis thaliana 
2014-01-16 | E-GEOD-44922 | biostudies-arrayexpress
ProteomicsRefDIC Protein profiling of mouse immune cells
Not available
ORGANISM(S): Mus musculus (Mouse) 
2011-04-15 | PRD000029 | Pride
TranscriptomicsGenome-wide analysis reveals unique regulation of transcription of Th2-specific genes by GATA3
Differentiation of naive CD4 T cells into type 2 helper (Th2) cells is accompanied by chromatin remodeling and increased expression of a set of Th2-specific genes including those encoding Th2 cytokines. IL-4-mediated STAT6 activation induces high levels of transcription of GATA3, a master regulator...
ORGANISM(S): Mus musculus 
2011-03-31 | E-GEOD-28292 | biostudies-arrayexpress
MetabolomicsFruit setting rewires central metabolism via gibberellin cascades
Fruit set is the process whereby ovaries develop into fruits after pollination and fertilization. The process is induced by the phytohormone gibberellin (GA) in tomatoes, as determined by the constitutive GA response mutant procera However, the role of GA on the metabolic behavior in fruit-setting o...
2020-09-11 | MTBLS1892 | MetaboLights
TranscriptomicsExpression data from various tomato plant tissues
Gene-to-gene coexpression analysis is a powerful approach to infer function of uncharacterized genes. To perform non-targeted coexpression analysis of tomato genes, we collected a developmental gene expression dataset using various tissues of tomato plant. Expression data are collected from 24 diffe...
ORGANISM(S): Solanum lycopersicum 
2010-02-21 | E-GEOD-19326 | biostudies-arrayexpress
MetabolomicsDefective cytokinin signaling reprograms lipid and flavonoid gene-to-metabolite networks to mitigate high salinity in Arabidopsis

Cytokinin (CK) in plants regulates both developmental processes and adaptation to environmental stress. Arabidopsis histidine phosphotransfer ahp2,3,5 and type-B response regulator arr1,10,12 triple mutants are almost completely defective in CK signaling, and the ahp2,3,5

2021-11-25 | MTBLS2532 | MetaboLights
ProteomicsDeep proteome analysis of initial meconium from human neonates
We conducted a deep proteomic analysis of meconium in 259 newborns to establish a meconium protein profile and gain insights into the underlying causes of neonatal diseases.
ORGANISM(S): Homo Sapiens (human) 
2024-05-30 | PXD047426 | JPOST Repository
ProteomicsDeep proteome analysis of initial meconium from human neonates for validation analysis
This project includes additional data of JPST002405. We conducted a deep proteomic analysis of meconium in 79 newborns to establish a meconium protein profile and gain insights into the underlying causes of neonatal diseases.
ORGANISM(S): Homo Sapiens (human) 
2024-05-30 | PXD050164 | JPOST Repository
TranscriptomicsAnalysis of small RNAs in piRNA pathway mutant mouse testes
Piwi-interacting RNAs are 25-32 nt small RNAs bound to Piwi proteins. To know the steps where factors involved in the piRNA biogenesis (MILI, MIWI2, ZUC (MitoPLD), MVH) work, we sequenced small RNAs from mutant mouse testes and analyzed piRNAs. Examination of small RNAs in testes of mutant mouse
ORGANISM(S): Mus musculus 
2010-05-27 | E-GEOD-20327 | biostudies-arrayexpress
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