Watson E E - OmicsDI

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Unknown (2528)
Transcriptomics (105)
Proteomics (34)
Genomics (32)
Metabolomics (13)
Other (1)

Organisms

Homo sapiens (74)
Mus musculus (27)
Rattus norvegicus (15)
Caenorhabditis elegans (11)
Arabidopsis thaliana (6)
Saccharomyces cerevisiae (4)
Schizosaccharomyces pombe (3)
Escherichia coli (2)
Streptococcus uberis (1)
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Escherichia coli CFT073 (1)
synthetic construct (1)
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Solanum lycopersicum (1)
Pseudomonas aeruginosa (1)
Sus scrofa (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Plasmodium (1)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
Medicago sativa (1)
Oryctolagus cuniculus (1)

Organisms

Escherichia coli str. K-12 substr. MG1655 (1)
Escherichia coli (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (122)
pride (29)
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geo (1)
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Tissue

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Disease

Melanoma (5)
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Hepatitis (1)
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Technology Type

Mass Spectrometry (29)
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Bottom-up proteomics (5)
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NMR spectroscopy (1)
NMR spectroscopy assay (1)
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HDMSE (1)
Olink affinity proteomics (1)
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Instrument Platform

NextSeq 2000 (3)
Illumina HiSeq 2000 (3)
NextSeq 500 (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
Exactive (Thermo Scientific) (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Nuclear Magnetic Resonance (NMR) - (2)
Scanning of was performed on an Axon 4000B scanner (1)
Jencons Millennium CO2 Incubator (1)
Illumina Genome Analyzer II (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
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Orbitrap Fusion (1)
Q Exactive (1)
Q Exactive Plus (1)
API 4000 QTRAP (AB Sciex) (1)
Agilent 5975E GC/MSD (Agilent) (1)
LTQ XL (Thermo Scientific) (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
MaXis (Bruker) (1)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (1)
Orbitrap Fusion (Thermo Fisher Scientific) (1)
Orbitrap Fusion (Thermo Fisher Scientific)_negative (1)
Quattro micro API (Waters) (1)

Publication Date

2010 (17)
2012 (16)
2015 (14)
2025 (13)
2013 (12)
2011 (12)
2017 (10)
2016 (9)
2022 (8)
2014 (8)
2008 (8)
2020 (7)
2023 (6)
2021 (6)
2026 (5)
2018 (5)
2009 (5)
2024 (4)
2019 (2)
2007 (1)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:16235 (6)
CHEBI:16708 (6)
CHEBI:16811 (6)
CHEBI:17368 (6)
CHEBI:25017 (6)
CHEBI:26986 (6)
CHEBI:15428 (5)
CHEBI:15676 (5)
CHEBI:15891 (5)
CHEBI:16449 (5)
CHEBI:16695 (5)
CHEBI:16919 (5)
CHEBI:17151 (5)
CHEBI:17568 (5)
CHEBI:17822 (5)
CHEBI:18186 (5)
CHEBI:18237 (5)
CHEBI:22653 (5)
CHEBI:22660 (5)
CHEBI:24898 (5)
CHEBI:25094 (5)
CHEBI:26078 (5)
CHEBI:26271 (5)
CHEBI:27266 (5)
CHEBI:27570 (5)
CHEBI:27897 (5)
CHEBI:28044 (5)
CHEBI:28300 (5)
CHEBI:15727 (4)
CHEBI:16027 (4)

Metabolite Name

Leucine (4)
UMP (4)
AMP (3)
Adenine (3)
Alanine (3)
Asparagine (3)
Citrulline (3)
Creatine (3)
Glutamine (3)
Glycine (3)
Histidine (3)
Hypoxanthine (3)
Isoleucine (3)
Leucine (3)
Lysine (3)
Methionine (3)
Phenylalanine (3)
Proline (3)
Serine (3)
Taurine (3)
Threonine (3)
Threonine (3)
Tryptophan (3)
Tyrosine (3)
Valine (3)
Xanthine (3)
Xanthosine (3)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (2)
1-deoxy-sphinganine (2)
2-C-Methyl-D-erythritol 4-phosphate (2)

First Public Date

2024 (1)
2023 (1)
2022 (1)
2015 (1)

Classification

bacteria (2)

Modification

1x(15)N labeled L-valine (1)
Not available (1)

Study type

Transcription profiling by array (63)
RNA-seq of coding RNA (11)
ChIP-seq (9)
Methylation profiling by array (6)
Methylation profiling by high throughput sequencing (6)
Transcription profiling by tiling array (5)
Other (4)
Transcription profiling by RT-PCR (3)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (2)
Animal - High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
DNA-seq (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)

Release Date

2025 (281)
2021 (276)
2022 (266)
2023 (246)
2024 (208)
2020 (171)
2018 (158)
2019 (140)
2015 (131)
2017 (113)
2016 (107)
2014 (93)
2013 (91)
2012 (72)
2011 (57)
2010 (56)
2009 (43)
2008 (38)
2026 (36)
2007 (18)
2006 (17)
2005 (9)
2003 (7)
2004 (4)
2002 (3)
2001 (3)
1999 (3)
1998 (2)
2000 (1)

Lab affiliation

Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Head of the Curie Institute Mass Spectrometry Platform (2)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (2)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cambridge Institute for Medical Research, Department of Clinical Neurosciences, Clinical School, University of Cambridge, Cambridge, CB2 0XY, UK (1)
Caprion Biosciences Inc. (1)
Department of Biochemistry University of Washington, Seattle (1)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (1)
Department of Medicinal Chemistry, University of Washington (1)
Deputy of the Department of Biophysical Chemistry Head of Space Biochemistry Group Elisa Richter Fellow Representative of Austria and Executive Council Member of the European Astrobiological Network EANA (1)
Division of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, OX3 9DU, UK. (1)
Division of Cell Matrix Biology and Regenerative Medicine School of Biological Sciences Faculty of Biology, Medical and Health Sciences University of Manchester (1)
Division of Molecular and Cellular Functions School of Biological Sciences FBMH The University of Manchester (1)
Faculty of Biological Sciences, Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, U.K. (1)
Faculty of Biological Sciences, Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, UK (1)
Institut de Génétique et de Biologie Moléculaire et Cellulaire IGBMC, Illkirch, France  Centre National de la Recherche Scientifique, UMR7104, Illkirch, France  Institut National de la Santé et de la Recherche Médicale, U964, Illkirch, France  Université de Strasbourg, Illkirch, France (1)
Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, United Kingdom (1)
King's College London School of Cardiovascular and Metabolic Medicine & Sciences James Black Centre 125 Coldharbour Lane, London, SE5 9NU (1)
Luxembourg Institute of Science and Technology “Environmental Research and Innovation” (ERIN) department (1)
School of Biological Sciences Victoria University of Wellington (1)
Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)
University College Dublin (1)
University of Oxford (1)
University of Washington, Department of Medicinal Chemistry (1)
Wellcome-Wolfson Institute for Experimental Medicine at Queen’s University Belfast (1)

Tags

pathogen:bacterium (2)
pathogen (2)
xref:PubMed:26246388 (1)
xref:PubMed:37855684 (1)
xref:EuropePMC:PMC9648695 (1)
xref:PubMed:38670632 (1)

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Non-Watson-Crick basepairing and hydration in RNA motifs: molecular dynamics of 5S rRNA loop E.

Not available

S-EPMC1302943 | biostudies-literature

A unified Watson-Crick geometry drives transcription of six-letter expanded DNA alphabets by E. coli RNA polymerase.

Not available

S-EPMC10716388 | biostudies-literature

Metabolomics and lipidomics reveal perturbation of sphingolipid metabolism by a novel anti-trypanosomal 3-(oxazolo[4,5-b]pyridine-2-yl)anilide

Trypanosoma brucei is the causative agent of human African trypanosomiasis, which is responsible for thousands of deaths every year. Current therapies are limited and there is an urgent need to develop new drugs. The anti-trypanosomal compound, 3-(oxazolo[4,5-b]pyridine-2-yl)anilide (OXPA), was init...

2017-10-09 | MTBLS360 | MetaboLights

Fecal microbiota transplantation plus anti-PD-1 immunotherapy in advanced melanoma: a phase I trial

Fecal microbiota transplantation (FMT) represents a potential strategy to overcome resistance to immune checkpoint inhibitors in patients with refractory melanoma; however, the role of FMT in first-line treatment settings has not been evaluated. We conducted a multicenter phase I trial combining ...

2025-02-27 | MTBLS711 | MetaboLights

Backbone-free duplex-stacked monomer nucleic acids exhibiting Watson-Crick selectivity.

Not available

S-EPMC6099888 | biostudies-literature

Patterns of dioxin-altered mRNA expression in livers of dioxin-sensitive versus dioxin-resistant rats

The dioxin congener 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) causes a wide range of toxic effects in rodent species, all of which are mediated by a ligand-dependent transcription-factor, the aryl hydrocarbon receptor (AHR). The Han/Wistar (Kuopio) (H/W) strain shows exceptional resistance to many ...

ORGANISM(S): Rattus norvegicus

2011-11-14 | E-GEOD-13513 | biostudies-arrayexpress

Artificial intelligence in neurodegenerative disease research: use of IBM Watson to identify additional RNA-binding proteins altered in amyotrophic lateral sclerosis.

Not available

S-EPMC5773659 | biostudies-literature

Allosteric differences dictate GroEL complementation of E. coli.

Not available

S-EPMC8887798 | biostudies-literature

Theoretical study of the Hoogsteen-Watson-Crick junctions in DNA.

Not available

S-EPMC1367086 | biostudies-literature

Vitamin E Acetate in Bronchoalveolar-Lavage Fluid Associated with EVALI.