Wei Chen C - OmicsDI

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Unknown (5870)
Proteomics (349)
Transcriptomics (188)
Genomics (94)
Metabolomics (55)
Multiomics (4)
Models (2)
Other (1)

Organisms

Homo sapiens (251)
Mus musculus (85)
Caenorhabditis elegans (26)
Arabidopsis thaliana (13)
Rattus norvegicus (8)
Saccharomyces cerevisiae (6)
Macaca mulatta (4)
Oryza sativa (4)
Zea mays (3)
Ovis aries (3)
Drosophila melanogaster (3)
Mycobacterium avium subsp. paratuberculosis (2)
Brassica napus (2)
Oryza sativa Indica Group (2)
Schizosaccharomyces pombe (2)
Glycine max (2)
Oryza sativa Japonica Group (2)
Bombyx mori (2)
Clostridioides difficile 630 (1)
Coccomyxa subellipsoidea C-169 (1)
Nannochloropsis oceanica (1)
Agrobacterium sp. 31749 (1)
Rhodopseudomonas palustris (1)
Tuber melanosporum (1)
Urocitellus parryii (1)
Pristionchus pacificus (1)
Chlamydomonas reinhardtii (1)
synthetic construct (1)
Xenopus laevis (1)
Trypanosoma brucei (1)

Organisms

Trichiurus japonicus (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (250)
iProX (175)
pride (147)
MetaboLights (52)
EGA (29)
MassIVE (14)
PeptideAtlas (7)
jPOST (4)
GNPS (3)
BioModels (2)
PAXDB (2)
ENA (2)
geo (1)
GPMDB (1)

Tissue

Cell culture (44)
Epithelial cell (14)
Leaf (10)
Liver (9)
Blood serum (8)
Testis (7)
Whole body (6)
Hepatocyte (6)
Others (5)
Plant cell (5)
Heart (5)
Blood cell (5)
Mesenchymal cell (4)
Macrophage (4)
Brain (4)
Blood (4)
Early embryonic cell (3)
Colon (3)
Male Reproductive System (2)
White adipocyte (2)
Brown adipocyte (2)
Malignant cell (2)
Flower (2)
Bone marrow (2)
Stem cell (2)
Spleen (2)
Lung (2)
Permanent cell line cell (2)
Kidney (2)
Saliva (2)

Disease

Breast cancer (7)
Colon cancer (7)
Cardiovascular system disease (4)
Disease free (4)
Acute leukemia (4)
Ovarian cancer (2)
Renal cell carcinoma (2)
Liver cancer (2)
Not Available (1)
Multidrug-resistant tuberculosis (1)
Limb-girdle muscular dystrophy (1)
Major depressive disorder (1)
Thyroid cancer (1)
Abnormality of prenatal development or birth (1)
Liver cirrhosis (1)
Polycystic Kidney (1)
Lung carcinoma (1)
Prostate adenocarcinoma (1)
Lung cancer (1)
Malignant neoplasm of ovary (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (147)
Shotgun proteomics (83)
Mass spectrometry (42)
Bottom-up proteomics (25)
Data-dependent acquisition (10)
Gel-based experiment (9)
Top-down proteomics (9)
Affinity purification coupled with mass spectrometry proteomics (9)
Mass spectrometry assay (6)
Data-independent acquisition (6)
SWATH MS (5)
NMR spectroscopy (4)
Proteogenomics (2)
DiaPASEF (2)
SRM/MRM (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
RNA mass spectrometry (1)
MSE (1)
All-ion fragmentation (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (19)
Liquid Chromatography MS - positive - reverse phase (15)
Liquid Chromatography MS - positive - hilic (8)
Liquid Chromatography MS - negative - hilic (7)
LTQ Orbitrap Elite (6)
Q Exactive HF (5)
Q Exactive (4)
Nuclear Magnetic Resonance (NMR) (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Illumina HiSeq 2000 (2)
TripleTOF 6600 (2)
TOF Pegasus HT (LECO) (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Xevo G2 QTOF (Waters) (2)
MS Imaging - (2)
Nuclear Magnetic Resonance (NMR) - (2)
Liquid Chromatography MS - negative (2)
Agilent 2100 bioanalyzer (1)
NanoDrop ND-1000 (1)
Affymetrix Genechip Command Console software (1)
Trizol Reagent (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
Instrument (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)

Publication Date

2011 (53)
2025 (50)
2021 (50)
2014 (48)
2022 (46)
2024 (37)
2012 (36)
2023 (33)
2020 (31)
2013 (29)
2026 (29)
2016 (28)
2015 (25)
2010 (21)
2017 (15)
2019 (15)
2008 (12)
2009 (10)
2018 (9)
2007 (4)
2005 (1)

UNIPROT ID/AC

I1JBY6_SOYBN (2)
I1MV75_SOYBN (2)
K7MRI2_SOYBN (2)
I1N7R4_SOYBN (2)
C6SYN9_SOYBN (2)
I1NE48_SOYBN (2)
K7LQ39_SOYBN (2)
I1N4T4_SOYBN (2)
I1JZ11_SOYBN (2)
I1LKT4_SOYBN (2)
I1K5F3_SOYBN (2)
K7M2N6_SOYBN (2)
K7MNY8_SOYBN (2)
I1LDH1_SOYBN (2)
RR11_SOYBN (2)
I1J4K5_SOYBN (2)
I1L481_SOYBN (2)
K7KVV5_SOYBN (2)
K7MH54_SOYBN (2)
K7LP44_SOYBN (2)
C6T5D5_SOYBN (2)
I1NAU6_SOYBN (2)
K7K663_SOYBN (2)
K7L2L5_SOYBN (2)
K7MF33_SOYBN (2)
K7LG05_SOYBN (2)
I1MVR8_SOYBN (2)
K7L5C6_SOYBN (2)
I1JA87_SOYBN (2)
I1KCC4_SOYBN (2)

ENSEMBL ID

ENSG00000247315 (5)
ENSG00000147251 (5)
ENSG00000170477 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17368 (16)
CHEBI:17895 (15)
CHEBI:30769 (15)
CHEBI:15891 (14)
CHEBI:16359 (14)
CHEBI:16335 (13)
CHEBI:16704 (13)
CHEBI:17295 (13)
CHEBI:17568 (12)
CHEBI:17203 (12)
CHEBI:18050 (12)
CHEBI:16015 (12)
CHEBI:16737 (12)
CHEBI:16919 (12)
CHEBI:16828 (12)
CHEBI:18089 (12)
CHEBI:17687 (12)
CHEBI:16755 (11)
CHEBI:28875 (11)
CHEBI:28834 (11)
CHEBI:9410 (11)
CHEBI:28865 (11)
CHEBI:15756 (11)
CHEBI:16525 (10)
CHEBI:16708 (10)
CHEBI:17562 (10)
CHEBI:28842 (10)
CHEBI:15741 (10)
CHEBI:15940 (10)
CHEBI:16467 (10)

Metabolite Name

Hypoxanthine (12)
Taurine (11)
L-Tyrosine (11)
Uracil (9)
L-Histidine (9)
Adenosine (9)
Xanthine (9)
Creatinine (9)
Creatine (9)
L-Phenylalanine (9)
L-Proline (8)
L-Arginine (8)
Succinic acid (8)
Citric acid (8)
Guanine (8)
Suberic acid (8)
L-Glutamine (8)
Guanosine (8)
Thymidine (8)
Uridine (8)
Indoleacetic acid (7)
Butyric acid (7)
Cholic acid (7)
Stearic acid (7)
L-Glutamate (7)
Dodecanoic acid (7)
Myristic acid (7)
Cytidine (7)
3-ketosphinganine (6)
L-Alanine (6)

First Public Date

2025 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)
Constraint-based model (1)

Lab affiliation

University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (4)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (3)
Department of Molecular & Integrative Physiology,University of Michigan Medical School, 5325 Brehm Tower, 1000 Wall St., Ann Arbor, MI, 48105 (3)
Department of Biochemistry and Department of Metabolic Medicine of the Fourth Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310058, China (2)
Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, National Key Laboratory of Medical Molecular Biology & Department of Immunology (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
New Cornerstone Science Laboratory, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, China (2)
School of Engineering, Westlake University (2)
Department of Stomatology, Nanfang Hospital, Southern Medical University, Guangzhou, China, 510515 (2)
School of Basic Medical Science, Peking University, China (2)
School of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (2)
Sichuan university (2)
Sun yat-sen university cancer center (2)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (2)
University of Alabama at Birmingham, Department of Pathology, Division MCP, O'Neal Comprehensive Cancer Center (2)
Northeast Agricultural University, St. Mucai, Harbin, Heilongjiang, 150030, China (1)
Medicine and Pharmacy Research Center, Binzhou Medical University (1)
Center for Tuberculosis Control of Guangdong Province (1)
Center for Tuberculosis Control of Guangdong Province, Guangzhou, 510630, China (1)
Washington University in St. Louis - School of Medicine Division of Endocrinology, Metabolism & Lipid Research (1)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
Institute of High Energy Physics, CAS (1)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing, P. R. China. (1)
John Cijiang He, MD/PhD Division of Nephrology, Box 1243 Mount Sinai School of Medicine One Gustave L Levy Place, New York NY 10029 Tel: 212-659-1703, Fax: 212-987-0389 (1)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, (1)
Institute of Zoology, Chinese Academy of Sciences, China (1)
School of Medicine, College of Medicine, Fu Jen Catholic Univeristy, New Taipei City, Taiwan (1)
Department of Applied Chemistry, Chaoyang University of Technology, 168 Jifong East Road, Wufong, Taichung 41349, Taiwan (1)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, Dongdan Santiao 5#, Dongcheng district, Beijing 100005, China (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Modification

57.021464 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (102)
ChIP-seq (53)
RNA-seq of coding RNA (45)
RNA-seq of non coding RNA (14)
Methylation profiling by high throughput sequencing (8)
Comparative genomic hybridization by array (5)
Genotyping by array (4)
Transcription profiling by RT-PCR (3)
Methylation profiling by array (3)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
RNAi profiling by array (2)
DNA-seq (2)
ChIP-chip by array (1)
Other (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2025 (971)
2022 (835)
2024 (813)
2023 (730)
2021 (555)
2020 (426)
2019 (318)
2018 (247)
2017 (211)
2016 (196)
2015 (161)
2026 (153)
2014 (130)
2011 (90)
2013 (89)
2012 (85)
2010 (42)
2009 (26)
2008 (22)
2007 (10)
2006 (3)
2005 (3)
2004 (3)
2003 (1)

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Three new species of Pilea (Urticaceae) from limestone karst in China.

Not available

S-EPMC3597003 | biostudies-literature

iTRAQ-Based Proteomics Analysis of Plasma of Myasthenia Gravis Patients Treated with Jia Wei Bu Zhong Yi Qi Decoction.

Not available

S-EPMC6930785 | biostudies-literature

Wei2011_MLCactivationPathway_EndothelialPermeability

This model is from the article: An Integrated Mathematical Model of Thrombin-, Histamine-and VEGF-Mediated Signalling in Endothelial Permeability. Wei X, Han B, Zhang J, Liu X, Tan C, Jiang Y, Low B, Tidor B, Chen Y. BMC Syst Biol. 2011 Jul 15;5:112. ...

2005-01-01 | MODEL1102210000 | BioModels

Identification of intermediate-sized non-coding RNAs involved in the UV-induced DNA damage response in C. elegans

We utilized high-throughput RNA-seq to uncover the intermediate-sized noncoding RNAs invovled in UV-DNA Damage Responses in C. elegans. 450 novel transfrags were discovered, some of which show dramatic expression change between the UV irradiation and control. This study should lead to a better under...

ORGANISM(S): Caenorhabditis elegans

2012-05-01 | E-GEOD-37063 | biostudies-arrayexpress

Transcriptome analysis reveals global regulation in response to CO2 supplementation in oleaginous microalga Coccomyxa subellipsoidea C-169

The microalga Coccomyxa subellipsoidea C-169 possesses some features that may be valuable for lipid production, and, as demonstrated in this study, can be greatly induced to produce a high amount of fatty acid by CO2 supplementation. Here we have compared the transcriptome of air group (AG, cells cu...

ORGANISM(S): Coccomyxa subellipsoidea C-169

2016-05-17 | E-GEOD-76638 | biostudies-arrayexpress

Expression analysis of Tim-3 knockdown RAW264.7 cell

Investigation of whole genome gene expression level changes in a Tim-3 knockdown RAW264.7 cell, compared to control siRNA transfected RAW264.7 cell. The Tim-3 knockdown of this cell render it hyper-reactive to TLR stimulation. Tim-3 knockdown analyzed in this study are further described in Li Y, Fen...

ORGANISM(S): Mus musculus

2012-12-05 | GSE42729 | GEO

Comparative analysis of serum proteins between hepatitis B virus genotype B and C infection DIA-based quantitative proteomics

Hepatitis B virus (HBV) is an enveloped, coated, non-cytopathic and hepatotropic partially double-stranded DNA virus in the family Hepadnaviridae genus Orthohepadnavirus. Despite significant progress in the availability of safe vaccines and antiviral therapies against HBV, it still affects approxima...

ORGANISM(S): Homo sapiens (Human)

2022-02-17 | PXD025968 | Pride

Serum proteins hbv genotype b and c infection dia-based quantitative proteomics

Long-Term Follow-Up of a Community Assignment, One-Time Endoscopic Screening Study of Esophageal Cancer in China.

Not available

S-EPMC4881309 | biostudies-literature

Interleukin-18 genetic polymorphisms contribute differentially to the susceptibility to Crohn's disease.

Not available

S-EPMC4515852 | biostudies-literature

Tibetan Medical Formula Shi-Wei-Gan-Ning-Pill Protects Against Carbon Tetrachloride-Induced Liver Fibrosis - An NMR-Based Metabolic Profiling.

Not available

S-EPMC6123542 | biostudies-literature