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Unknown (4570)
Transcriptomics (155)
Proteomics (150)
Genomics (34)
Genomic (8)
Models (6)
Metabolomics (4)

Organisms

Homo sapiens (75)
Mus musculus (70)
Arabidopsis thaliana (8)
Francisella tularensis (5)
Saccharomyces cerevisiae (4)
Danio rerio (4)
Brassica rapa (2)
Staphylococcus aureus (2)
Triticum aestivum (2)
Pseudomonas aeruginosa (2)
Rattus norvegicus (2)
Drosophila melanogaster (2)
Eukaryota (1)
Veillonella parvula DSM 2008 (1)
Triticum turgidum subsp. durum (1)
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Populus trichocarpa x Populus deltoides (1)
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Salmonella enterica subsp. enterica serovar Typhimurium (1)
Solanum lycopersicum (1)
Sus scrofa (1)
Bos taurus (1)
Gallus gallus (1)
Caenorhabditis elegans (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (177)
pride (128)
PeptideAtlas (11)
EGA (10)
dbGaP (8)
BioModels (6)
MassIVE (6)
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Tissue

Cell culture (26)
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HCT-116 cell (18)
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Permanent cell line cell (2)

Disease

Brain cancer (5)
Acute leukemia (4)
Non-small cell lung carcinoma (3)
Colon cancer (3)
Alpha 1-antitrypsin deficiency (2)
Glioblastoma (2)
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Cholesterol embolism (1)
Heart disease (1)
Murine hereditary hemochromatosis (1)
Acute promyelocytic leukemia (1)
Essential thrombocythemia (1)
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Gastrointestinal system disease (1)
Polycythemia vera (1)
Myelodysplastic syndrome (1)
Amyotrophic lateral sclerosis type 1 (1)
Age related macular degeneration (1)
Prostate adenocarcinoma (1)
Liver disease (1)
Mixed disorder as reaction to stress (1)
Lymphoma (1)
Lung cancer (1)
Neuroblastoma (1)
Cervix carcinoma (1)
Melanoma (1)
Cardiovascular system disease (1)
Parkinson's disease (1)
Alzheimer's disease (1)
Renal cell carcinoma (1)

Technology Type

Mass Spectrometry (128)
Shotgun proteomics (71)
Bottom-up proteomics (22)
Affinity purification coupled with mass spectrometry proteomics (14)
Data-dependent acquisition (12)
Data-independent acquisition (11)
SWATH MS (7)
Gel-based experiment (5)
Mass spectrometry (3)
Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Proteogenomics (1)
MSE (1)
All-ion fragmentation (1)
DiaPASEF (1)

Instrument Platform

LTQ (11)
NextSeq 500 (7)
Illumina NovaSeq 6000 (6)
Illumina MiSeq (4)
Other (2)
R (2)
Illumina HiSeq 2000 (2)
TripleTOF 5600 (2)
Q Exactive HF-X (2)
Orbitrap Fusion Lumos (2)
KAPA EvoPrep Kit (1)
Linux Bash Scripting (1)
NEBNext Ultra II Directional RNA Library Prep (1)
Qiagen RNeasy Mini Kit (1)
With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
GeneTitan Multi-Channel (MC) Instrument (1)
AB SOLiD 4 System (1)
AB SOLiD System 3.0 (1)
G2565AA DNA microarray scanner [Agilent] (1)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq X (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
TripleTOF 6600 (1)
LTQ Orbitrap Velos (1)
Q Exactive (1)
Direct infusion MS - negative (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2022 (35)
2025 (26)
2013 (26)
2015 (25)
2023 (22)
2014 (22)
2010 (20)
2026 (17)
2024 (16)
2016 (16)
2021 (15)
2012 (15)
2009 (14)
2020 (12)
2008 (12)
2011 (8)
2018 (7)
2017 (6)
2019 (5)
2007 (4)
2006 (1)
2005 (1)

UNIPROT ID/AC

Q23096_CAEEL (3)
O45930_CAEEL (3)
Q65XX9_CAEEL (3)
Q9TXU7_CAEEL (3)
SBDS_CAEEL (3)
SEM5_CAEEL (3)
6239.F44E5.5 (3)
Q21739_CAEEL (3)
Q8T3A5_CAEEL (3)
6239.H08J11.2 (3)
TBP_CAEEL (3)
Q8MYM8_CAEEL (3)
H2KZ19_CAEEL (3)
Q9N5Y7_CAEEL (3)
O61793_CAEEL (3)
Q23652_CAEEL (3)
B6VQ51_CAEEL (3)
E2JL04_CAEEL (3)
A5Z2T9_CAEEL (3)
O01816_CAEEL (3)
P90919_CAEEL (3)
RM18_CAEEL (3)
G5EFG4_CAEEL (3)
SET26_CAEEL (3)
G5ECS9_CAEEL (3)
O45871_CAEEL (3)
H2KZ82_CAEEL (3)
TMM33_CAEEL (3)
P04821 (1)
P30291 (1)

CHEBI ID

CHEBI:15428 (2)
CHEBI:17115 (2)
CHEBI:39548 (1)
CHEBI:16651 (1)
CHEBI:73073 (1)
CHEBI:85591 (1)
CHEBI:135063 (1)
CHEBI:70819 (1)
CHEBI:21949 (1)
CHEBI:18021 (1)
CHEBI:45441 (1)
CHEBI:17482 (1)
CHEBI:73061 (1)
CHEBI:17672 (1)
CHEBI:29888 (1)
CHEBI:15682 (1)
CHEBI:17553 (1)
CHEBI:20392 (1)
CHEBI:27551 (1)
CHEBI:15713 (1)
CHEBI:17659 (1)
CHEBI:15414 (1)
CHEBI:16680 (1)
CHEBI:16709 (1)
CHEBI:26271 (1)
CHEBI:17287 (1)
CHEBI:18132 (1)
CHEBI:17858 (1)
CHEBI:16856 (1)
CHEBI:17138 (1)

Metabolite Name

Uridine monophosphate (1)
Cystenylglycine (1)
Hydroxycinnamicacid (1)
N-acetyl-serine (1)
<small>L</small>-serine (1)
<small>L</small>-methionine (1)
Guanosine monophosphate (1)
Cytidine monophosphate (1)
S-Adenosyl-Homocysteine (1)
S-Adenosyl-Methionine (1)
Carbamoylphosphate (1)
Pyrophosphoric acid (1)
Aconitate (1)
Oleylcarnitine (1)
5-methylcytosine (1)
Argininosuccinate (1)
Glycerylphosphorylcholine (1)
Phosphorylethanolamine (1)
Glyceraldehyde 3-phosphate (1)
Alpha-ketoglutaric acid (1)
GTP (1)
Pipecolinic acid (1)
2-hydroxyglutaric acid (1)
Ethanolamine (1)
Cystathionine (1)
N-Acetylaspartate (1)
Glutathione (1)
GABA (1)
Malate (1)
Hypotaurine (1)

First Public Date

2024 (2)

Modelling Approach

Ordinary differential equation model (2)
Random forest procedure (1)
Computational model (1)
Constraint-based model (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (18)
Institute for Biochemistry, University of Cologne (3)
Friedrich Miescher Institute for Biomedical Research, FMI, Switzerland (3)
Hannover Medical School Institute for Clinical Biochemistry (OE 4340) Carl-Neuberg-Strasse 1 Building J03, Level 04, Room 1291 (Office), Room 1250 (Lab) 30625 Hannover (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry ( lab head ) (2)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
The Hospital for Sick Children (2)
Associate Professor, University of Washington (2)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (2)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (2)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (2)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 United States of America (1)
University of Pittsburgh School of Medicine, Ophthalmology department (1)
Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA (1)
Bioinformatics, TruDiagnostic, USA (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
School of Medicine, University College Dublin (1)
Institute for Cardiovascular Physiology, Faculty of Medicine, Goethe-University; Frankfurt am Main, Germany (1)
Department of Medicine III and IZKF, University Hospital Aachen, Aachen, Germany (1)
Murdoch Children’s Research Institute, Melbourne (1)
Department of Molecular Genetics Faculty of Biochemistry Weizmann Institute of Science, Rehovot, Israel (1)
Neurosurgeon & Senior Scientist Developmental and Stem Cell Biology, The Hospital for Sick Children, Canada (1)
Institute of Medical Biochemistry, Protein Core Facility, Medical University of Innsbruck, 6020 Innsbruck, Austria (1)
Department of Biology, Microbial Ecology and Limnoc Microbiology, University of Konstanz (1)
German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf, Germany phone : +49-(0)-211-33-82-451 Legal body: Deutsche Diabetes-Forschungsgesellschaft e.V. (1)
Molecular Systems Biology (MoSys), Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria (1)
University of Hohenheim Institute of Animal Science (1)
Soochow university, China (1)
Proteomics Unit Navarrabiomed-Proteored-ISCIII (Pamplona, Spain) (1)

IsPrivate

False (6)

Submitter Keywords

Machine Learning Model (2)
FAIR-AIML (1)

Modification

227.126991 (1)
9.030194 (1)
15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (108)
RNA-seq of coding RNA (24)
ChIP-seq (16)
Hi-C (4)
DNA-seq (4)
Comparative genomic hybridization by array (3)
Other (3)
Methylation profiling by array (3)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
Methylation profiling by high throughput sequencing (2)
Animal - High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
4C (1)
CUT&RUN (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (515)
2021 (512)
2023 (446)
2025 (419)
2024 (365)
2020 (352)
2019 (339)
2018 (276)
2017 (228)
2016 (223)
2015 (208)
2014 (170)
2013 (134)
2012 (118)
2010 (90)
2011 (86)
2009 (64)
2026 (59)
2008 (55)
2007 (21)
2006 (14)
2005 (13)
2001 (10)
2004 (7)
2003 (6)
2000 (6)
2002 (4)
1999 (4)
1997 (2)
1998 (1)

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Characterizing the transcriptional adaptation of Staphylococcus aureus to stationary phase growth

Staphylococcus aureus is an important human pathogen that causes life-threatening infections, and is resistant to the majority of our antibiotic arsenal. This resistance is complicated by the observation that most antibacterial agents target actively growing cells, thus, proving ineffective against ...

ORGANISM(S): Staphylococcus aureus

2016-05-18 | E-GEOD-77242 | biostudies-arrayexpress

Curie-Weiss behavior of liquid structure and ideal glass state.

Not available

S-EPMC6901545 | biostudies-literature

Association of Nrf2 expression and mutation with Weiss and Helsinki scores in adrenocortical carcinoma.

Not available

S-EPMC9277251 | biostudies-literature

Environmental impact and mobility of thallium and other metal(oid)s in soils and tailings near a decommissioned Zn-Pb mine (Raibl, NE Italian Alps).

Not available

S-EPMC11861154 | biostudies-literature

The susceptibility of disulfide bonds towards radiation damage may be explained by S⋯O interactions.

Not available

S-EPMC7467163 | biostudies-literature

Dynamic Complexes in the Chaperonin-Mediated Protein Folding Cycle.

Not available

S-EPMC5143341 | biostudies-literature

Solvothermal Synthesis of [Cr₇ S₈ (en)₈ Cl₂ ]Cl₃ ⋅ 2H₂ O with Magnetically Frustrated [Cr₇ S₈ ]⁵⁺ Double-Cubes.

Not available

S-EPMC9300142 | biostudies-literature

ISCA1 is essential for mitochondrial Fe₄S₄ biogenesis in vivo.

Not available

S-EPMC5437272 | biostudies-literature

Facultative mycorrhization in a fern (Struthiopteris spicant L. Weiss) is bound to light intensity.

Not available

S-EPMC10854079 | biostudies-literature

The Poly(C) binding protein Pcbp2, and its retrotransposed derivative Pcbp1, are independently essential to mouse development

RNA-binding proteins participate in a complex array of post-transcriptional controls essential to cell-type specification and somatic development. Despite their detailed biochemical characterizations, the degree to which each RNA-binding protein impacts on mammalian embryonic development remains in...

ORGANISM(S): Mus musculus

2015-11-05 | E-GEOD-72491 | biostudies-arrayexpress

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4927 Results

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Organisms

Organisms

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Tissue

Disease

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UNIPROT ID/AC

CHEBI ID

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First Public Date

Modelling Approach

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IsPrivate

Submitter Keywords

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