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TranscriptomicsTranscription profiling of human major leukocyte types isolated or differentiated and stimulated by LPS, IgE, and PMA from blood to characterise their expression profiles
WArning Files GSM90663.txt and GSM90665.txt are identical. In the present study we used Affymetrix oligonucleotide microarrays to produce gene transcription profiles for the major leukocyte types in humans. This comprehensive dataset enabled us to not only establish which genes were expressed in ea...
ORGANISM(S): Homo sapiens 
2007-10-27 | E-GEOD-3982 | biostudies-arrayexpress
UnknownValidation of an automatic tool for the rapid measurement of brain atrophy and white matter hyperintensity: QyScore®.
Not available
S-EPMC9038894 | biostudies-literature
ProteomicsTargeted exercise enhances functional integration of engineered muscle grafts after volumetric muscle loss
Damage that affects large volumes of skeletal muscle tissue can severely impact health, mobility, and quality-of-life. Efforts to restore muscle function by implanting engineered grafts at the site of damage have demonstrated limited restoration of force production. Various forms of mechanical and b...
ORGANISM(S): Mus musculus (Mouse) 
2025-05-06 | PXD039237 | Pride
Engineered muscle graft Muscle phosphoproteomics Volumetric muscle loss 
TranscriptomicsChIP-on-chip of OmpR binding in Salmonella enterica serovar Typhimurium strain SL1344 and E.scherichia coli strain CSH50 at pH 7 and pH 4.5 including analysis of OmpR binding in SL1344 in the absence and presence of novobiocin (25 M-NM-
OmpR is a DNA binding protein belonging to the OmpR/EnvZ two component system. This system is known to sense changes in osmolarity in Escherichia coli. Recently, OmpR in Salmonella enterica serovar Typhimurium was found to be activated by acidic pH and DNA relaxation. In this study, ChIP-on-chip wa...
ORGANISM(S): Escherichia coli K-12 
2014-03-27 | E-GEOD-49914 | biostudies-arrayexpress
GenomicsTime course DNase assays on Drosophila melanogaster and Drosophila virilis embryos during embryogenesis II
DNase-seq over 2 matching developmental time points in Drosophila melanogaster and Drosophila virilis embryos was performed. The aim is to assess conservation of hypersensitive regions between two distantly related species. Samples were sequenced using Illumina NextSeq. This Study is an extension to...
ORGANISM(S): Drosophila virilis 
2021-05-21 | E-MTAB-9480 | biostudies-arrayexpress
TranscriptomicsAvian duodenum tissues: primary vs. secondary E. acervulina infected
Global transcriptional responses in duodenal intestinal epithelia of chickens following primary and secondary Eimeria acervulina infections. Simple loop hybridization (day 0 vs. days 1-2, days 1-2 vs. 3-4, days 3-4 vs. 5-6, and days 5-6 vs. 7-8) per primary or secondary infections.
ORGANISM(S): Gallus gallus 
2010-05-18 | E-GEOD-16230 | biostudies-arrayexpress
GenomicsDrosophila melanogaster 4C-Seq experiments in whole embro and mesoderm cells during embryogenesis
Chromosome conformation capture (4C-Seq) in Drosophila Twist-H2B embryos (carrying nuclear tag specifically in the mesoderm) during embryogenesis was performed, anchoring on 107 different viewpoints. Two timepoints (3-4hrs and 6-8hrs after egg laying) and two tissue context (whole embryo and mesoder...
ORGANISM(S): Drosophila melanogaster 
2014-06-26 | E-MTAB-2180 | biostudies-arrayexpress
UnknownLipokine 5-PAHSA Is Regulated by Adipose Triglyceride Lipase and Primes Adipocytes for De Novo Lipogenesis in Mice.
Not available
S-EPMC7118252 | biostudies-literature
TranscriptomicsChromatin immunoprecipitation of Twist protein during embryonic development in Drosophila
Genomewide mapping of Drosophila Twist protein binding during embryonic development. Two consecutive timepoints (2-4 and 4-6 hrs after egg-laying) were assayed in four independent repeats each. Two different antibodies were used to precipitate the Twist protein. Additionally, preimmune-serum was use...
ORGANISM(S): Drosophila melanogaster 
2007-03-28 | E-TABM-159 | biostudies-arrayexpress
TranscriptomicsRNA-seq of liver tissue and liver cancer cell lines
This dataset has been designed to test whether codons in mRNAs and anticodons in tRNAs vary in order to maximize translation in specific cellular conditions in mammals. Prokaryotes and simple unicellular eukaryotes optimize their translational rates by adjusting the codons in the protein-coding tran...
ORGANISM(S): human 
2016-04-18 | E-MTAB-4052 | biostudies-arrayexpress
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