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ProteomicsUse of condensed tannins to improve dietary protein utilization in ruminant diets: effects on lamb tissue proteome
Cistus ladanifer L. is a common shrub endemic to the Mediterranean that is highly concentrated in condensed tannins (CT). CT form complexes with dietary protein that resist microbial degradation in the rumen, which enhances dietary protein utilization in ruminant diets. The objective of this study w...
ORGANISM(S): Ovis aries 
2021-02-16 | PXD015689 | Pride
Lc-ms Peri-renal adipose tissues Longissimus lumborum muscle Condensed tannins Proteome 2d-dige Hepatic 
TranscriptomicsOscillations in supercoiling drive circadian gene expression in cyanobacteria
The cyanobacterium Synechococcus elongatus PCC 7942 exhibits oscillations in mRNA transcript abundance with 24-hour periodicity under continuous light conditions. The mechanism underlying these oscillations remains elusive â?? neither cis nor trans-factors controlling circadian gene expression phase...
ORGANISM(S): Synechococcus elongatus PCC 7942 
2010-05-19 | E-GEOD-18902 | biostudies-arrayexpress
TranscriptomicsTranslational control through ribosome traffic jams and aborted protein synthesis
Translational control is a widespread mode of gene regulation in organisms ranging from bacteria to mammals. Computational models posit that translational control of protein expression during elongation is exerted through a traffic jam of multiple ribosomes at ribosome pause sites on mRNAs. Yet neit...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2014-05-15 | E-GEOD-51052 | biostudies-arrayexpress
TranscriptomicsRedefining the translational status of 80S monosomes
Fully assembled ribosomes exist in two populations: polysomes and monosomes. While the former has been studied extensively, to what extent translation occurs on monosomes and its importance for overall translational output remains controversial. Here, we used ribosome profiling to examine the transl...
ORGANISM(S): Saccharomyces cerevisiae 
2016-02-11 | E-GEOD-76117 | biostudies-arrayexpress
TranscriptomicsTranscriptome Response of Leukocytes from Chickens Infected with Avian Pathogenic Escherichia coli Identifies Pathways Associated with Resistance
Gene expression profiling of peripheral blood leukocytes in male broiler chickens exposed to APEC O1. Comparisons were made between Day 1 and Day 5 of all treatment groups, between differences in pathology and effect of vaccine on spleen gene expression. The goal was to determine expression differ...
ORGANISM(S): Gallus gallus 
2012-03-01 | E-GEOD-31387 | biostudies-arrayexpress
UnknownGender specific differences in the liver proteome of rats exposed to short term and low-concentration hexabromocyclododecane (HBCD).
Not available
S-EPMC6062380 | biostudies-literature
MetabolomicsGNPS - From plants to ants: Evaluating lipidomic changes in leaf-cutter ant fungus gardens
Leaf-cutter ants use fresh plant material to cultivate an obligate mutualistic fungus Leucoagaricus gongylophorus in specialized fungus gardens to access and transform nutrients from plant biomass that would otherwise be unavailable to the ants. Here, we evaluated the lipidomic differences between t...
ORGANISM(S): Environmental Samples <bacteria> (ncbitaxon:48479) 
2019-10-30 | MSV000084520 | GNPS
TranscriptomicsRNA-seq of high grade serous ovarian cancer samples stratified by progression free survival
The purpose of the experiment was to determine an immune profile consisting of immune genes and cell types in high grade serous ovarian cancer tissue from patients with various lengths of progression free survival. Formalin fixed paraffin embedded (FFPE) tissue was screened for 80% cellularity and 2...
ORGANISM(S): Homo sapiens 
2021-11-02 | E-MTAB-9743 | biostudies-arrayexpress
TranscriptomicsCarbon-Deprivation-Driven Transcriptome Reprogramming in Detached Developmentally-Arresting Arabidopsis Inflorescences
Senescence is genetically-controlled and activated in mature tissues during ageing. However, immature plant tissues also display senescence-like symptoms when continuously exposed to adverse energy-depleting conditions. We used detached dark-held immature inflorescences of Arabidopsis thaliana to un...
ORGANISM(S): Arabidopsis thaliana 
2012-09-25 | E-GEOD-41099 | biostudies-arrayexpress
TranscriptomicsRibosome profiling upon glucose starvation in S. cerevisiae
A universal feature of the response to stress and nutrient limitation is transcriptional upregulation of genes encoding proteins important for survival. Interestingly, under many of these conditions overall protein synthesis levels are reduced, thereby dampening the stress response at the level of ...
ORGANISM(S): Saccharomyces cerevisiae 
2014-07-28 | E-GEOD-56622 | biostudies-arrayexpress
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