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TranscriptomicsProfiling of WSSV infection in hepatopancreas of shrimp
Profiles of gene expression in hepatopancreas isolated from shrimp experimentally infected with White Spot Syndrome Virus were compared to those of un-infected controls Keywords: response to viral disease Two groups of eight shrimp were compared in terms of hepatopancreas gene expression, 40 hours a...
ORGANISM(S): Litopenaeus vannamei 
2010-07-01 | E-GEOD-4955 | biostudies-arrayexpress
TranscriptomicsTissue-specific expression profiles in L. vannamei
RNA from different tissues of Litopenaeus vannamei was used to test the ability of the microarray to discriminate tissue-specific gene expression profiles Keywords: validation, tissue comparison RNA from circulating hemocytes, gills, hepatopancreas, or muscle (3 biological replicates each) was hybri...
ORGANISM(S): Litopenaeus vannamei 
2010-07-01 | E-GEOD-4949 | biostudies-arrayexpress
TranscriptomicsEvaluation of technical (array-to-array) reproducibility of L. vannamei microarray
Five aliquots of the same RNA sample were labeled and hybridized in parallel to the L. vannamei microarray, in order to assess the technical reproducibility of the tool Keywords: technical validation A sample of gill total RNA was divided in 5 identical aliquots, and each aliquot was labeled and hyb...
ORGANISM(S): Litopenaeus vannamei 
2010-07-01 | E-GEOD-4954 | biostudies-arrayexpress
UnknownDuration of androgen deprivation therapy with postoperative radiotherapy for prostate cancer: a comparison of long-course versus short-course androgen deprivation therapy in the RADICALS-HD randomised trial.
Not available
S-EPMC7616389 | biostudies-literature
UnknownSingle nucleotide polymorphisms with cis-regulatory effects on long non-coding transcripts in human primary monocytes.
Not available
S-EPMC4099216 | biostudies-literature
UnknownAdding 6 months of androgen deprivation therapy to postoperative radiotherapy for prostate cancer: a comparison of short-course versus no androgen deprivation therapy in the RADICALS-HD randomised controlled trial.
Not available
S-EPMC7616360 | biostudies-literature
TranscriptomicsKras mutant v WT with or without AZD6244 in vivo study
HCT116 (kRas mt) cells and HKH2 (Kras wt) cells were implanted into the right and left flanks of nude mice and either untreated or treated with a MEK inhibitor (AZD6244) over time. Tumours were excised and harvested for RNA extraction at the end of the experiment and hybridised to the Colorectal DS...
ORGANISM(S): Homo sapiens 
2012-04-30 | E-MEXP-3557 | biostudies-arrayexpress
TranscriptomicsIntegrative genomic analysis identifies clinically relevant subtypes of head and neck cancer characterized by hypoxia, T-cell infiltration, and EMT
Current classification of head and neck squamous cell carcinomas (HNSCC) based on anatomic site and clinical stage fails to capture biologic heterogeneity or adequately inform treatment. Here we use consensus clustering on 371 HNSCC in three cohorts, including a new cohort of 134 patients with locor...
ORGANISM(S): Homo sapiens 
2015-03-04 | E-GEOD-40774 | biostudies-arrayexpress
TranscriptomicsWidespread genetic epistasis among cancer genes.
We performed NGS-based transcript profiling (RNA-seq) to profile transcripts that are expressed in MCF10A cells. 12,332 genes with FPKM>1 were considered as expressed in MCF10A cells. mRNA profiles of MCF10A cells were generated by deep sequencing using Illumina Hiseq 2000.
ORGANISM(S): Homo sapiens 
2014-08-01 | E-GEOD-58834 | biostudies-arrayexpress
UnknownEpigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci.
Not available
S-EPMC4492394 | biostudies-literature
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