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TranscriptomicsTranscription profiling of light and carbon signaling interactions in Arabidopsis
A. thaliana seeds of Columbia (Col-0) ecotype were surface-sterilized, plated on designated media and vernalized for 48 hours at 8C. Plants were grown semi-hydroponically under 16-hr-light, 8-hr-dark cycles at a constant temperature of 23C on basal Murashige and Skoog medium supplemented with 2 mM K...
ORGANISM(S): Arabidopsis thaliana 
2004-01-23 | E-MEXP-71 | biostudies-arrayexpress
TranscriptomicsTranscriptomic responses of juvenile Pacific whiteleg shrimp, Litopenaeus vannamei, to hypoxia and hypercapnic hypoxia
Here we used microarrays to characterize changes in global gene expression in the hepatopancreas of Pacific white shrimp, Litopenaeus vannamei, exposed to short term (4 h) hypoxia (H) or hypercapnic hypoxia (HH) or long term (24 h) H or HH, compared to animals in air-saturated water (normoxia). Th...
ORGANISM(S): Litopenaeus vannamei 
2012-04-29 | E-GEOD-29029 | biostudies-arrayexpress
TranscriptomicsGene expression in response to genetic and chemical perturbations of chromatin structure
Microarray expression profiling was used to identify genes expressed misexpressed in wild-type Arabidopsis seedlings treated with 5-aza-2’ deoxyctidine (5AC) or trichostatin A (TSA), and in decrease in dna methylation1 (ddm1) mutant seedlings. 10 day-old Arabidopsis seedlings (ecotype Ws) were grown...
ORGANISM(S): Arabidopsis thaliana 
2011-06-03 | E-GEOD-25067 | biostudies-arrayexpress
TranscriptomicsFive Omic Technologies Are Concordant in Differentiating the Biochemical Characteristics of the Berries of Five Grapevine (Vitis vinifera L.) Cultivars
Background: Grape cultivars and wines are distinguishable by their color, flavor and aroma profiles. Omic analyses (transcripts, proteins and metabolites) are powerful tools for assessing biochemical differences in biological systems. Results: Berry skins of red- (Cabernet Sauvignon, Merlot, Pinot ...
ORGANISM(S): Vitis vinifera 
2015-11-12 | E-GEOD-72421 | biostudies-arrayexpress
UnknownArterial stiffness and progression of cerebral white matter hyperintensities in patients with type 2 diabetes and matched controls: a 5-year cohort study.
Not available
S-EPMC8236189 | biostudies-literature
TranscriptomicsRNA-seq of a time series experiment of leaf 3 tissue (primordia / leaf blade) of Arabidopsis plants grown under EoD FR since day 6, since day 18 or under WL conditions.
This RNA-seq was designed to help gain understanding on the genetic program behind phytochrome developmental time dependent control of leaf 3 (L3) cell proliferation and expansion phases, to ultimately regulate organ growth. Briefly, Arabidopsis thaliana Col-0 plants were grown under a light : dark ...
ORGANISM(S): Arabidopsis thaliana 
2021-02-18 | E-MTAB-9445 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis acn1-2 and Col-7 lines to investigate the links between organic acid and carbohydrate regulation of gene expression.
Arabidopsis acetate non-utilizing mutants were isolated based on fluoroacetate resistant germination. Interestingly, a number of these mutants exhibited altered developmental characteristics in response to exogenous sucrose supply, such as bleaching of the cotyledons. A preliminary microarray exper...
ORGANISM(S): Arabidopsis thaliana 
2008-06-14 | E-GEOD-6158 | biostudies-arrayexpress
TranscriptomicsGenome-wide alterations in yeast strains lacking RNase H1, RNase H2, or both RNase H1 and RNase H2
Two types of RNA:DNA associations can lead to genome instability: the formation of R-loops during transcription and the incorporation of ribonucleotide monophosphates (rNMPs) into DNA during replication. Both ribonuclease (RNase) H1 and RNase H2 degrade the RNA component of R-loops, whereas only RNa...
ORGANISM(S): Saccharomyces cerevisiae 
2015-09-23 | E-GEOD-73334 | biostudies-arrayexpress
TranscriptomicsChemopreventive effect of flaxseed-enriched diet on ovarian cancer in laying hen.
The objective of this study was to identify the molecular mechanisms and biological pathways associated with the anticancer effects of flaxseed (richest plant source of Omega-3 fatty acid) in laying hen model of ovarian cancer. Study shows a significant reduction in the severity of the disease and ...
ORGANISM(S): Gallus gallus 
2015-05-18 | E-GEOD-40376 | biostudies-arrayexpress
TranscriptomicsRegulation of Migration and Invasive Potential of Neuroblastoma Cells Mediated By MYCN miR-335 and Multiple TGF-Beta Signalling Pathway Members
Transcription profiling of the neuroblastoma cell line Kelly following transient transfection with Pre-miR-335 and negative controls to identify potential miR-335 target genes.
ORGANISM(S): Homo sapiens 
2012-04-30 | E-MEXP-3274 | biostudies-arrayexpress
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