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ProteomicsMetabolic characterization of two white-rot fungi in diverse cultivation environments reveals biotechnologically relevant biosynthetic pathways
Two white-rot fungi, Trametes versicolor and Gelatoporia subvermispora, were cultivated in different environments - agitation and static incubation modes and variations in the level of antioxidants - during the conversion of a lignin-related aromatic compound and cellobiose. Both incubation mode and...
ORGANISM(S): Gelatoporia Subvermispora (ncbitaxon:42742) Trametes Versicolor (ncbitaxon:5325) 
2024-08-05 | MSV000095519 | MassIVE
ProteomicsTwo closely related white rot fungi, Obba rivulosa and Gelatoporia subvermispora, produce orthologous plant cell wall degrading enzymes for spruce wood degradation
Unique ability of basidiomycete white rot fungi to degrade all components of plant cell walls makes them indispensable organisms in global carbon cycle. In this study, we analyzed proteomes of two closely related white rot fungi, Obba rivulosa and Gelatoporia subvermispora, while growing on solid sp...
ORGANISM(S): Ceriporiopsis subvermispora Obba rivulosa 
2022-08-08 | PXD030609 | Pride
Cazymes White rot fungi Obba rivulosa Gelatoporia subvermispora Proteome Lignin biodegradation Lc-ms/ms 
ProteomicsIntracellular pathways for lignin catabolism in white-rot fungi
White-rot fungi (WRF), considered the most efficient organisms at degrading organic carbon in the biosphere, are found in plant cell wall lignin biopolymer. We employ multi-omics to demonstrate that Trametes versicolor and Gelatoporia subvermispora funnel lignin-derived aromatic compounds into centr...
ORGANISM(S): Trametes versicolor Ceriporiopsis subvermispora 
2021-02-10 | PXD019839 | Pride
White-rot fungi Aromatic compound Lignin Multi-omics Poplar Systems biology 
TranscriptomicsDevelopmental and metabolic plasticity of ripe Semillon grape berries in response to Botrytis cinerea during noble rot
Noble rot results from atypical infections of ripe grape berries by Botrytis cinerea. Unlike bunch rot, noble rot promotes favorable changes in grape berries and accumulation of secondary metabolites that enhance wine grape quality. Noble rot-infected berries of Sémillon, a white-skinned variety, w...
ORGANISM(S): Vitis vinifera 
2015-10-12 | E-GEOD-67932 | biostudies-arrayexpress
ProteomicsElucidating lignin catabolism in white rot fungi
We propose to elucidate new metabolic pathways in fungi - with a special focus on white rot fungi (WRF)- involved in the catabolism of lignin-derived aromatic compounds. Basidiomycete fungi, in particular WRF, are the most efficient organisms for the depolymerization and mineralization of lignin to ...
ORGANISM(S): Ceriporiopsis Subvermispora Trametes Versicolor 
2024-05-16 | MSV000094781 | MassIVE
GenomicsIntracellular pathways for lignin catabolism in white-rot fungi
Intracellular pathways for lignin catabolism in white-rot fungi
PRJNA636664 | ENA
ProteomicsShotgun proteomic analysis of the Methionine oxidation of carbohydrate-active enzymes during white-rot wood decay.
Methionine oxydation level was monitored by tandem mass spectrometry for secreted proteins and intracellular proteins from the white-rot fungus Pycnoporus cinnabarinus grown on aspen wood.
ORGANISM(S): Pycnoporus <basidiomycete fungi> 
2024-11-06 | PXD046271 | Pride
Methionine oxidation Wood decay Carbohydrate-active enzymes Plant cell wall Redox proteomics Fungi 
TranscriptomicsComparing gene expression timing and amplitude to delineate the unique pathways of brown and white rot wood-degrading fungi
Wood-degrading fungi play a critical role in global carbon cycling, and their varied mechanisms for deconstruction offer pathways for industrial bioconversion. In this study, we used comparative genomics to isolate upregulation patterns among fungi with brown rot (carbohydrate-selective) or white ro...
ORGANISM(S): Pleurotus ostreatus Gloeophyllum trabeum Rhodonia placenta Trametes versicolor 
2018-01-05 | GSE108189 | GEO
ProteomicsSpatial connectomics to identify agents relevant to lignocellulose deconstruction in fungi
Characterization of secretome of two white rot and two brown rot fungal species grown on aspen. Goal is to utilize temporal sampling to assist in elucidating lignocellulose degradation mechanism
ORGANISM(S): Trametes versicolor Postia placenta Gloeophyllum trabeum (Brown rot fungus) Serpula lacrymans 
2018-07-16 | PXD009480 | Pride
Lignocellulose Proteomics Fungi 
UnknownComparative study of genome-wide plant biomass-degrading CAZymes in white rot, brown rot and soft rot fungi.
Not available
S-EPMC6059041 | biostudies-literature
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