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ProteomicsImproving Genome Annotation of Enterotoxigenic Escherichia coli TW10598 by a Label-Free Quantitative MS/MS Approach
The most commonly used genome annotation processes are to a great extent based on computational methods. However, those can only predict genes that have been described earlier or that have sequence signatures indicative of a gene function. We reported a synonymous proteogenomic approach for experime...
ORGANISM(S): Escherichia coli 
2015-09-15 | PXD002473 | Pride
Synonymous proteogenomics Enterotoxigenic escherichia coli Label-free quantification Genome annotation 
ProteomicsA Proteomic View of Escherichia coli Metabolic Features
Escherichia coli is an important human pathogen, among others a cause of severe diarrhea diseases and urinary tract infections. The ability to distinguish different pathogenic E. coli subspecies is crucial for correct treatment of the infection. Characterization and quantification of clinical isolat...
ORGANISM(S): Escherichia coli 
2020-10-19 | PXD005760 | Pride
Bacterial metabolism Virulence Escherichia coli Label-free quantification 
ProteomicsProteomics of Diverse Clonal Groups of Enterotoxigenic Escherichia coli Underline Variations in Surface Antigens and Similarities in Metabolism
Enterotoxigenic Escherichia coli (ETEC) is an important cause of diarrhoea, a pervasive disease in low- and middle-income countries that affects mostly young children and visiting travellers. Substantial diversity exists among ETEC isolates, hindering development of effective preventive means. To in...
ORGANISM(S): Escherichia coli 
2017-12-06 | PXD005259 | Pride
Bacterial metabolism Virulence Proteogenomics H10407 Label-free quantification Plasmid Enterotoxigenic escherichia coli 
ProteomicsExpressed Proteome of Extraintestinal Escherichia coli Associated with Urinary Tract Infections
Extraintestinal pathogenic Escherichia coli (ExPEC) have a capacity to cause serious infections of blood, the central nervous system and particularly the urinary tract. Relatively little is known about how ExPEC adapt their cell-wide protein expression to environments with different carbon sources a...
ORGANISM(S): Escherichia coli 
2016-07-04 | PXD002912 | Pride
Lfq Extraintestinal/ uropathogenic escherichia coli Lc-ms/ms 
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