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MetabolomicsPlasmid-encoded toxin defence mediates mutualistic microbial interactions

Gut environments harbour dense microbial ecosystems in which plasmids are widely distributed. Plasmids facilitate the exchange of genetic material among microorganisms while enabling the transfer of a diverse array of accessory functions. However, their precise impact on microbial community compo...

2023-08-10 | MTBLS7248 | MetaboLights
MetabolomicsMetabolomic Reprogramming Induced by Conjugative Acquisition of Carbapenemase-producing IncX3 Plasmid Revealed by Untargeted LC-MS/MS Profiling

This study aimed to elucidate the metabolic process of IncX3 plasmid within conjugated strains, by utilizing untargeted LC-MS/MS profiling. In this study, the blaNDM-5-carrying IncX3 plasmid was successfully conjugated into Escherichia coli J53, which was confirmed to enhance both carbap...

2026-09-27 | MTBLS13918 | MetaboLights
ProteomicsClostridium autoethanogenum isopropanol production via native plasmid pCA replicon
Clostridium autoethanogenum isopropanol production via native plasmid pCA replicon
ORGANISM(S): Clostridium Autoethanogenum (ncbitaxon:84023) 
2022-05-10 | MSV000089452 | MassIVE
ProteomicsImpact of a conjugative plasmid on plant growth-promoting Bacillus velezensis
Bacillus velezensis strain GH1-13 with a native conjugative plasmid (pBV71) is thought to be beneficial to the bacterium, although no information on its effects exists. Here we show that strain GH1-13 frequently lost the plasmid during normal growth conditions in a rich medium and changed the morpho...
ORGANISM(S): Bacillus velezensis 
2021-05-17 | PXD017305 | Pride
Plant growth-promoting rhizobacteria Conjugative plasmid Bacillus velezensis 
GenomicsSynthetic plasmid
Synthetic plasmid Genome sequencing
PRJNA209332 | ENA
GenomicsPlasmid pED208
Plasmid pED208 Genome sequencing and assembly
PRJNA871772 | ENA
GenomicsPlasmid pKJK172
Plasmid pKJK172 Genome sequencing and assembly
PRJNA432895 | ENA
TranscriptomicsComplexity of expression from transiently transfected plasmids
Transient plasmid transfection is common approach for studies in cultured mammalian cells. To examine behavior of transfected plasmids, we analyzed their transcriptional landscape by deep sequencing. We found that plasmids generate different levels of transcripts virtually everywhere. Spurious trans...
ORGANISM(S): Homo sapiens 
2012-08-17 | E-GEOD-36062 | biostudies-arrayexpress
ProteomicsA plasmid goes viral, part 2 - A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells
Analysis of protein compostition of plasmid vesicles (PVs) purified through CsCl gradients.
ORGANISM(S): Halorubrum lacusprofundi ATCC 49239 
2017-07-14 | PXD006515 | Pride
Membrane vesicles Virus Haloarchaea Plasmid 
GenomicsSynthetic plasmid
DSB-induced transcription of pLac-Tet plasmid in cell-free extracts.
PRJNA304447 | ENA
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