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MetabolomicsFermented cotton stalks preserve colonic epithelial integrity in Hu sheep by modulating the microbiota–metabolite–NF-kB/MLCK axis

This study compared three cotton-stalk processing strategies—grinding (FS), steam explosion (PH), and microbial fermentation (FJ)—and evaluated whether the barrier-preserving phenotype observed with fermented cotton stalks is associated with coordinated changes in the microbiota–metabolite milieu...

2026-03-18 | MTBLS14078 | MetaboLights
TranscriptomicsGlobal analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense
Gossypium barbadense is widely cultivated because of its extra-long staple cotton with superior luster, silkiness and high yield. These economically important traits were selected during initial domestication of an agronomically inferior wild ancestor, followed by millennia of human- mediated select...
ORGANISM(S): Gossypium barbadense 
2008-11-13 | E-GEOD-13022 | biostudies-arrayexpress
TranscriptomicsDifferentiation of fiber initials on cotton ovules
Transcriptional profiling of cotton ovule cells. Comparison of expression of genes in cultured ovules (-1 DPA) treated with or without phytohormones (5um IAA and 1um GA) and over a time-course from 0 to 12 hours. The phytohormone incubation periods for unfertilized ovules were 0, 1, 3, 6, and 12 ho...
ORGANISM(S): Gossypium hirsutum 
2015-05-01 | E-GEOD-66251 | biostudies-arrayexpress
TranscriptomicsGene expression in developing wild and domesticated fibers of Upland cotton (Gossypium hirsutum)
We explored the transcriptomic alterations associated with domestication by interrogating a developmental time course of cotton fibers from the wild G. hirsutum var. yucatanense and a representative of an elite domesticated line. 30 chip design - including 2 species (wild and domesticated cotton), b...
ORGANISM(S): Gossypium hirsutum 
2010-12-22 | E-GEOD-23517 | biostudies-arrayexpress
TranscriptomicsTranscriptomics analyses of Gossypium hirsutum fiber in wild-type and immature fiber mutant
We performed a comparative genomics approach between im mutant and TM-1 in order to understand the function of im gene reducing the degree of fiber cell wall development. We compared transcriptome profiles of developing fibers (10, 17, and 28 days post anthesis (DPA)) between two NILs using Affymetr...
ORGANISM(S): Gossypium hirsutum 
2014-05-01 | E-MEXP-3901 | biostudies-arrayexpress
TranscriptomicsParallel expression evolution of oxidative stress-related genes in fiber of wild/domesticated & diploid/polyploid cotton
Reactive oxygen species (ROS) play a prominent role in signal transduction and cellular homeostasis in plants. However, imbalances between generation and elimination of ROS can give rise to oxidative stress in growing cells. Because ROS are important to cell growth, ROS modulation could be responsiv...
ORGANISM(S): Gossypium tomentosum 
2009-07-24 | E-GEOD-17084 | biostudies-arrayexpress
TranscriptomicsComparative expression profiling of miRNA during anther development in genetic male sterile and wild type cotton [small RNA]
Genetic male sterility (GMS) in cotton (Gossypium hirsutum) plays an important role in the utilization of hybrid vigor. However, the molecular mechanism of the GMS is still unclear. While numerous studies have demonstrated that microRNAs (miRNA) regulate flower and anther development, whether differ...
ORGANISM(S): Gossypium hirsutum 
2013-07-28 | E-GEOD-43531 | biostudies-arrayexpress
ProteomicsCotton fiber LC-MS/MS - Proteomic Analysis of Differences in Fiber Development between Wild and Cultivated Gossypium hirsutum L
Upland cotton (Gossypium hirsutum L.) is one of the world’s most important fiber crops, accounting for more than 90% of all cotton production. While their wild progenitors have relatively short and coarse, often tan-colored fibers, modern cotton cultivars possess longer, finer, stronger, and whiter ...
ORGANISM(S): Gossypium hirsutum 
2017-08-28 | PXD006604 | Pride
Fiber development Gossypium hirsutun Itraq Domestication 
TranscriptomicsComparative analysis of transcriptome profiles of G. hirsutum L. cv. MCU5 and its fuzzless-lintless mutant during fiber development stages.
Cotton is one of the most commercially important Fiber crops in the world and used as a source for natural textile Fiber and cottonseed oil. The fuzzless-lintless ovules of cotton mutants are ideal source for identifying genes involved in Fiber development by comparing with Fiber bearing ovules of w...
ORGANISM(S): Gossypium hirsutum 
2013-06-14 | E-GEOD-38490 | biostudies-arrayexpress
ProteomicsiTRAQ-Facilitated Proteomic Profiling of Cotton Anthers
Cotton (Gossypium hirsutum L.) is an important economic crop, used mainly for the production of textile fiber. Using a space mutation breeding technique, a novel photosensitive genetic male sterile mutant CCRI9106 was isolated from the wild-type upland cotton cultivar CCRI040029. To use CCRI9106 in ...
ORGANISM(S): Gossypium hirsutum 
2015-06-11 | PXD002209 | Pride
Cotton Itraq Anther 
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