Wild isolates - OmicsDI

Show results for

Unknown (3457)
Genomics (579)
Transcriptomics (215)
Proteomics (31)
Metabolomics (8)
Other (6)
Models (1)

Organisms

Saccharomyces cerevisiae (35)
Mus musculus (18)
Caenorhabditis elegans (13)
Staphylococcus aureus (12)
Candida albicans (12)
Escherichia coli (8)
Homo sapiens (7)
Streptococcus pyogenes (6)
Hordeum vulgare (6)
Pseudomonas aeruginosa (6)
Bordetella pertussis (4)
Actinobacillus pleuropneumoniae (3)
Streptococcus agalactiae (3)
Campylobacter jejuni (3)
Mycobacterium tuberculosis (3)
Neurospora crassa (3)
Helicobacter pylori (3)
Podospora anserina (2)
Haemophilus influenzae (2)
Zika virus (2)
Lepeophtheirus salmonis (2)
Burkholderia cepacia (2)
Sus scrofa (2)
Campylobacter jejuni subsp. jejuni 81-176 (2)
Staphylococcus aureus subsp. aureus NCTC 8325 (2)
Shigella flexneri 2a str. 2457T (1)
Helicobacter pylori P12 (1)
Proteus mirabilis HI4320 (1)
Campylobacter coli (1)
Aspergillus flavus (1)

Organisms

Saccharomyces cerevisiae (22)
Escherichia coli (21)
Caenorhabditis elegans (20)
Mus musculus (12)
Vibrio cholerae (10)
Candida albicans (10)
Nakaseomyces glabratus (5)
Homo sapiens (5)
Streptococcus pyogenes (4)
Pseudomonas aeruginosa (4)
Oscheius tipulae (3)
Escherichia albertii (3)
Campylobacter jejuni subsp. jejuni (3)
Campylobacter jejuni (3)
Schizosaccharomyces pombe (3)
Helicobacter pylori (3)
Candidozyma auris (3)
Influenza A virus (3)
Plasmodium falciparum (3)
Bacteria (3)
Staphylococcus aureus (3)
Campylobacter jejuni subsp. jejuni 81-176 (2)
Caenorhabditis tropicalis (2)
Aspergillus flavus (2)
Pseudomonas syringae pv. actinidiae (2)
Yersinia pseudotuberculosis (2)
Klebsiella variicola (2)
Neurospora crassa (2)
Listeria monocytogenes (2)
Rattus norvegicus (2)

Repository

ENA (567)
biostudies-arrayexpress (153)
geo (79)
pride (27)
MetaboLights (7)
iProX (2)
MassIVE (2)
BioModels (1)
EGA (1)
EVA (1)
GNPS (1)

Tissue

Biofilm (1)
Cell culture (1)
Cell line cell culturing (1)
Epithelial cell (1)
Foreskin fibroblast (1)
Foreskin fibroblast cell line (1)
Sputum (1)

Disease

Cystic fibrosis (2)
Plasmodium berghei CTRP knockout strain (Dessens et al., 1999) infection (1)
Colitis (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (27)
Shotgun proteomics (14)
Mass spectrometry (5)
Bottom-up proteomics (5)
Data-independent acquisition (4)
SWATH MS (4)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)

Instrument Platform

Illumina HiSeq 2000 (4)
High resolution C. scanner (2)
GenePix 4000B [Axon Instruments] (2)
Illumina HiSeq 1500 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Lightwave (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer IIx (1)
NanoDrop (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Orbitrap Fusion (1)
TimsTOF HT (1)
TimsTOF Pro 2 (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2010 (42)
2013 (21)
2009 (21)
2011 (20)
2012 (16)
2014 (14)
2021 (14)
2022 (13)
2015 (13)
2008 (12)
2026 (12)
2025 (12)
2024 (11)
2016 (10)
2020 (8)
2018 (8)
2019 (6)
2006 (6)
2023 (6)
2007 (3)
2017 (2)
2005 (1)
2004 (1)

CHEBI ID

CHEBI:42111 (3)
CHEBI:15428 (3)
CHEBI:18012 (3)
CHEBI:32816 (3)
CHEBI:30915 (3)
CHEBI:15741 (3)
CHEBI:17084 (2)
CHEBI:17822 (2)
CHEBI:6650 (2)
CHEBI:16238 (2)
CHEBI:28842 (2)
CHEBI:16027 (2)
CHEBI:16708 (2)
CHEBI:17568 (2)
CHEBI:16196 (2)
CHEBI:183219 (1)
CHEBI:183218 (1)
CHEBI:183216 (1)
CHEBI:183215 (1)
CHEBI:183214 (1)
CHEBI:183213 (1)
CHEBI:183212 (1)
CHEBI:183211 (1)
CHEBI:159047 (1)
CHEBI:183210 (1)
CHEBI:183209 (1)
CHEBI:183208 (1)
CHEBI:162444 (1)
CHEBI:183206 (1)
CHEBI:183205 (1)

Metabolite Name

Adenosine (3)
Pyridine (2)
Glutamate (2)
Spermine (2)
Uracil (2)
D-Proline (2)
L-Phenylalanine (2)
Sclerosporide (1)
4-amino-2,3-dihydroxy-N-[1-(8-hydroxy-1-oxo-3,4-dihydroisochromen-3-yl)-3-methylbutyl]hexanediamide (1)
Altoprev Lovastatin (1)
PhytoS1P (1)
Preaspernidgulene A2 (1)
Acyl carnitine C16:2 (1)
Botcinin A (1)
Ubiquinol 50 (1)
D-Geodin (1)
(2S)-2-[(2S,3S)-3-amino-5-oxooxolan-2-yl]-2-hydroxy-N-[(1S)-1-[(3S)-8-hydroxy-1-oxo-3,4-dihydroisochromen-3-yl]-3-methylbutyl]acetamide (1)
Emeriphenolicin E (1)
Preaspernidgulene A1 (1)
Dahliane J (1)
2-tetradec-7-enoyl-sn-glycerol 3-phosphate (1)
Cis-7-tetradecenoyl-D-asparagine (1)
Triprostatin B (1)
ACMC-20mleh (1)
12 hete (1)
(E)-9-(4-aminophenyl)-7-hydroxy-2,4,6-trimethyl-9-oxonon-2-enoic acid (1)
4-[2-(aminomethyl)-2-(hydroxymethyl)-5-oxopyrrolidin-1-yl]-3-(pentan-3-ylamino)benzoic acid (1)
N-[(3R,7R)-(?)-(9,10)-Dihydrojasmonoyl]-(S)-isoleucine (1)
Sperabillin C (1)
Ubiquinol-2 (1)

IsPrivate

False (1)

Submitter Keywords

Manuscript Accepted (1)

First Public Date

2026 (61)
2021 (58)
2022 (54)
2025 (50)
2024 (50)
2023 (49)
2020 (46)
2014 (42)
2019 (38)
2018 (33)
2016 (26)
2015 (23)
2017 (18)
2013 (12)
2010 (3)
2012 (2)
2011 (2)

Classification

bacteria (97)
fungi (25)
viruses (5)
protozoa (4)

Modelling Approach

Agent-based model (1)

Study type

Transcription profiling by array (92)
Comparative genomic hybridization by array (28)
RNA-seq of coding RNA (20)
Unknown experiment type (5)
ChIP-seq (2)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (329)
2021 (309)
2023 (299)
2020 (262)
2024 (239)
2025 (235)
2019 (204)
2018 (186)
2017 (181)
2016 (167)
2015 (159)
2014 (137)
2013 (133)
2010 (129)
2011 (102)
2012 (89)
2009 (72)
2007 (56)
2008 (51)
2006 (40)
2005 (33)
2003 (31)
2002 (31)
2026 (30)
2001 (28)
2000 (27)
1999 (20)
2004 (19)
1998 (12)

Lab affiliation

Charité Universitätsmedizin, Department of Biochemistry, 10117 Berlin, Germany The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK Max Planck Institute for Molecular Genetics, Berlin, Germany (2)
Pacific Northwest National Laboratory (2)
Boston College (1)
Cell Biology Department Harvard Medical School (1)
Centre of Molecular and Environmental Biology, University of Minho (Portugal) (1)
Centro de Investigación Biomédica en Red en Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, Madrid, Spain Instituto de Biomedicina de Sevilla IBIS, Hospital Universitario Virgen Macarena/CSIC/Universidad de Sevilla, Seville, Spain Departamento de Microbiología, Facultad de Medicina, Universidad de Sevilla, Seville, Spain (1)
Chair in Infection and Global Health, Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, (1)
Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (1)
Department of Agricultural Chemistry, Soil sciences and Microbiology, University of Cordoba, Cordoba, Spain. (1)
Department of Biochemistry and Biophysics Smilow Center for Translational Research Perelman School of Medicine University of Pennsylvania Room 9-124 (office) 3400 Civic Center Blvd Philadelphia, PA 19104 215-573-9423 (office) (1)
Department of Biochemistry, University of Cambridge, UK (1)
Drug, Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, VIC, 3052, Australia (1)
Ghent University, Department of Biochemistry and Microbiology (1)
Head of Drug Discovery and Evaluation Center for Research of Pathogenicity and Virulence of Parasites Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic phone: +420 325 873 966 (1)
Helmholtz Institute for Pharmaceutical Research Saarland, Microbial Natural Products (1)
Institute of Molecular Systems Biology, ETH Zurich, Switzerland (1)
Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald-Insel Riems,Germany (1)
Institute of Parasitology, Vetsuisse Faculty, University of Berne, Länggass-Strasse 122, CH-3012 Berne, Switzerland (1)
Institute of Structural and Molecular Biology, Division of Biosciences, Darwin Building, University College London, Gower Street, London WC1E 6BT, United Kingdom (1)
Interfaculty Institute of Microbiology and Infection Medicine, Infection Biology Department, University of Tübingen, Auf der Morgenstelle 28 72076 Tübingen, Germany (1)
Microbiology department at the Icahn School of Medicine atMount Sinai (1)
Novozyems A/S (1)
Robert Koch-Institute, Centre for Biological Threats and Special Pathogens, Proteomics and Spectroscopy (ZBS6), Berlin, Germany (1)
Unraveling the immunosuppressive role of Elastase B produced by cystic fibrosis isolates of Pseudomonas aeruginosa in an organotypic 3-D lung epithelial cell model (1)
WCAIR, School of Life Sciences, BCDD, University of Dundee (1)

Previous page
1 / 430
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 430
Next page

Sort by:

Relevance

Page size

Comparative genomic hybridization of Bordetella pertussis clinical isoltates circultating in Senegal

Genomic content of Bordetella pertussis clinical isolates circulating in Senegal

ORGANISM(S): Bordetella pertussis

2009-01-08 | E-MEXP-1674 | biostudies-arrayexpress

Azole Resistance Mechanism in Candida glabrata Oropharyngeal Isolates

Microarray was used to analyze azole resistance of Candida glabrata oropharyngeal isolates from 7 hematopoietic stem cell transplant recipients receiving fluconazole prophylaxis. Transcriptional profiling of the sequential-paired clinical isolates by microarray revealed 19 genes upregulated in the m...

ORGANISM(S): Candida glabrata

2010-07-07 | E-GEOD-21352 | biostudies-arrayexpress

Comparative genomic hybridizations of Mycobacterium avium isolates obtained from multiple host species

A comparative genomic approach was used to identify large sequence polymorphisms among Mycobacterium avium isolates obtained from a variety of host species. DNA microarrays were used as a platform for comparing mycobacteria field isolates with the sequenced bovine isolate Mycobacterium avium subsp....

ORGANISM(S): Mycobacterium avium

2010-06-11 | E-GEOD-7622 | biostudies-arrayexpress

Comparative genomic hybridization of Bordetella pertussis isolates collected in France in 2007 and a reference strain

Genomic content of Bortelella pertussis clinical isolates collected in 2007 in France using 3 isolates and one reference strain

ORGANISM(S): Bordetella pertussis

2009-10-20 | E-MEXP-1871 | biostudies-arrayexpress

Copy number variation in the genomes of twelve natural isolates of Caenorhabditis elegans

Background: Copy number variation is an important component of genetic variation in higher eukaryotes. The extent of natural copy number variation in C. elegans is unknown outside of 2 highly divergent wild isolates and the canonical N2 Bristol strain. Results: We have used array comparative genomic...

ORGANISM(S): Caenorhabditis elegans

2010-05-17 | E-GEOD-19440 | biostudies-arrayexpress

Development of Helicobacter pylori microarrays to test pathogenicity of clinical isolates

To distinguish between Helicobacter pylori isolates that may cause greater disease in patients, we used whole genome expression profiling as a platform to study host-pathogen interactions and identify gene signatures associated with isolates from patients with higher cancer risk. Expression profiles...

ORGANISM(S): Homo sapiens

2013-08-05 | E-GEOD-41497 | biostudies-arrayexpress

Comparative genomic hybridization of Bordetella pertussis clinical isolates circulating in areas of intensive children vaccination and a reference strain

Genomic content of Bordetella pertussis clinical isolates circulating in areas of intensive children vaccination. 13 isolates and one reference strain of Bordetella pertussis used.

ORGANISM(S): Bordetella pertussis

2008-10-01 | E-MEXP-1322 | biostudies-arrayexpress

Cystobactamid resistant clinical isolates

Generated cystobactamid resistant clinical isolates of E. coli compared to WT show YgiV upregulation and fimbrial downregulation

ORGANISM(S): Escherichia coli

2024-10-11 | PXD051732 | Pride

Wild bacteria isolates

Whole genome sequencing and assembly of select wild bacteria isolate genomes in the pilot WormFood CURE experiment

PRJNA1473339 | ENA

Response of gastric epithelial progenitors to H. pylori isolates from Swedish patients with chronic atrophic gastritis

This SuperSeries is composed of the following subset Series: GSE16390: Response of gastric epithelial progenitors to H. pylori isolates from Swedish patients with chronic atrophic gastritis 1 GSE16439: Response of gastric epithelial progenitors to H. pylori isolates from Swedish patients with chroni...

ORGANISM(S): Mus musculus

2009-10-26 | E-GEOD-16440 | biostudies-arrayexpress

Previous page
1 / 430
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 430
Next page

Sort by:

Relevance

Page size

4298 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

IsPrivate

Submitter Keywords

First Public Date

Classification

Modelling Approach

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets