Wilhelm C C - OmicsDI

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Unknown (1670)
Proteomics (224)
Transcriptomics (100)
Genomics (19)
Metabolomics (7)
Models (2)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (171)
Mus musculus (38)
Arabidopsis thaliana (31)
Fusarium sinicum (29)
Schizosaccharomyces pombe (7)
Saccharomyces cerevisiae (6)
Triticum aestivum (5)
Escherichia coli (5)
Rattus norvegicus (4)
Hydra vulgaris (3)
Zea mays (3)
Xenopus laevis (2)
Bos taurus (2)
Drosophila melanogaster (2)
Danio rerio (2)
cellular organisms (1)
Capsicum annuum (1)
Rhizoctonia solani (1)
Schmidtea mediterranea (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Escherichia coli O157:H7 str. EDL933 (1)
82076 (1)
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Caenorhabditis elegans (1)
Daphnia magna (1)
Geobacillus sp. E263 (1)
Lolium perenne (1)
Lolium perenne/Epichloe festucae mixed library (1)
Oleispira antarctica (1)

Organisms

Mus musculus (7)
Homo sapiens (3)

Repository

biostudies-arrayexpress (106)
pride (103)
PeptideAtlas (60)
PAXDB (33)
MassIVE (25)
ENA (10)
EGA (6)
MetaboLights (6)
BioModels (2)
GNPS (1)
GPMDB (1)
iProX (1)

Tissue

Others (60)
Cell culture (32)
Leaf (11)
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Blood (3)
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B cell (2)
B-cell chronic lymphocytic leukemia cell (2)

Disease

Colon cancer (7)
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Not Available (1)
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COVID-19 (1)
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Hepatocellular carcinoma (1)
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Prostate cancer (1)
Severe acute respiratory syndrome (1)
Squamous cell carcinoma (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (103)
Shotgun proteomics (77)
Data-dependent acquisition (12)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (10)
Gel-based experiment (8)
Mass spectrometry (6)
SRM/MRM (2)
NMR spectroscopy (1)
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Mass spectrometry imaging (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

LTQ Orbitrap XL (60)
Orbitrap Fusion Lumos (9)
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Illumina HiSeq 2500 (3)
LTQ Orbitrap (3)
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LTQ Orbitrap Elite (2)
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TimsTOF Pro (2)
Liquid Chromatography MS - negative - hilic (2)
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Liquid Chromatography MS - positive - hilic (2)
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Illumina NovaSeq 6000 (1)
Instrument (1)
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Orbitrap Eclipse (1)
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Q Exactive Plus (1)
Liquid Chromatography MS - alternating - hilic (1)
MSSimulator (1)
Nuclear Magnetic Resonance (NMR) - (1)
SYNAPT HDMS (Waters) (1)
Thermo Trace GC PolarisQ (1)

Publication Date

2013 (67)
2019 (42)
2020 (26)
2017 (24)
2015 (22)
2022 (19)
2010 (17)
2024 (15)
2023 (14)
2021 (11)
2014 (10)
2018 (10)
2025 (9)
2016 (8)
2011 (7)
2009 (7)
2008 (7)
2012 (6)
2026 (6)
2005 (4)
2007 (2)
2004 (2)
2006 (1)
2003 (1)

UNIPROT ID/AC

O13297 (1)
O13329 (1)
O13511 (1)
O13512 (1)
O13516 (1)
O13525 (1)
O13527 (1)
O13528 (1)
O13529 (1)
O13534 (1)
O13535 (1)
O13539 (1)
O13547 (1)
O13556 (1)
O13559 (1)
O13563 (1)
O13577 (1)
O13578 (1)
O13585 (1)
O14455 (1)
O14464 (1)
O14467 (1)
O14468 (1)
O42831 (1)
O43137 (1)
O60200 (1)
O74302 (1)
O74700 (1)
O75012 (1)
O94742 (1)

ENSEMBL ID

ENSG00000170477 (56)
ENSG00000147251 (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:10723 (1)
CHEBI:1463 (1)
CHEBI:15343 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15377 (1)
CHEBI:15380 (1)
CHEBI:15414 (1)
CHEBI:15421 (1)
CHEBI:15422 (1)
CHEBI:15430 (1)
CHEBI:15435 (1)
CHEBI:15437 (1)
CHEBI:15439 (1)
CHEBI:15440 (1)
CHEBI:15441 (1)
CHEBI:15442 (1)
CHEBI:15467 (1)
CHEBI:15471 (1)
CHEBI:15473 (1)
CHEBI:15476 (1)
CHEBI:15490 (1)
CHEBI:15491 (1)
CHEBI:15494 (1)
CHEBI:15517 (1)
CHEBI:15519 (1)
CHEBI:15521 (1)

Metabolite Name

Hypoxanthine (3)
Pyroglutamic acid (3)
2-hydroxyglutaric acid (2)
Adenine (2)
Adenosine (2)
Betaine (2)
Creatine (2)
Creatinine (2)
Cytidine (2)
Deoxycholic acid (2)
Deoxyinosine (2)
Glutamine (2)
Isoleucine (2)
Kynurenic acid (2)
Leucine (2)
Methionine (2)
Riboflavin (2)
Sarcosine (2)
Sucrose (2)
Taurine (2)
Threonine (2)
Tryptophan (2)
Tyrosine (2)
Uracil (2)
Uridine (2)
Valine (2)
(+/-)5,6-EpETrE (1)
(+/-)8,9-EpETrE (1)
(1,2,3-trimethyl-2-cyclopropen-1-yl)benzene (1)
(1-methylbutyl)cyclopentane (1)

First Public Date

2017 (4)
2019 (3)
2014 (3)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (10)
Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (9)
Forschungszentrum Juelich ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (4)
Chair of Proteomics and Bioanalytics Technical University of Munich Emil-Erlenmeyer-Forum 5 85354 Freising Germany (3)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (3)
Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str. D-52425 Juelich Germany (3)
Cell Signaling and Metabolism Group German Cancer Research Center (DKFZ) (2)
Chair of Proteomics and Bioanalytics, Technical University of Munich (2)
Chair of Proteomics and Bioanalytics, Technische Universitaet Muenchen (2)
Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA USA (2)
German Cancer Research Center (DKFZ) (2)
TUM (2)
Technical University in Munich (2)
Technical University of Munich TUM School of Life Scienes Weihenstephan Freising, Germany (2)
"Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany" (1)
1 German Cancer Consortium of Translational Cancer Research (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany 2 IIIrd Medical Department, Klinikum rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany 3 Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Munich, Germany (1)
1 Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Functional Genomics and Cancer Department, Illkirch, France 2 Institut National de la Santé et de la Recherche Médicale (INSERM), U 1258, Illkirch, France 3 Centre National de la Recherche Scientifique (CNRS),UMR 7104, Illkirch, France 4 Université de Strasbourg, Illkirch, France (1)
Angiogenesis & Metabolism Laboratory, Max Planck Institut for Heart and Lung Research, 61231 Bad Nauheim, Germany (1)
BioBix, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, Ghent, Belgium (1)
Centre for Genomic Regulation, Universitat Pompeu Fabra (1)
Centre for Organismal Studies Dep. Molecular Evolution and Genomics University of Heidelberg 69120 Heidelberg Germany (1)
Chair for Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (1)
Chair of Proteomics and Bioanalytics Technische Universitaet Muenchen (1)
Chair of Proteomics and Bioanalytics, TU Munich, Germany (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), 85354 Freising, Germany (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany Bavarian Center for Biomolecular Mass Spectrometry, Freising, Germany (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Germany (1)
College of Veterinary Medicine, The state Key Laboratory of Agricultural Microbiology, Cooperative Innovation Center of Substantial Pig Production, Wuhan, 433070, China (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Study type

Transcription profiling by array (64)
RNA-seq of coding RNA (22)
Transcription profiling by tiling array (2)
ChIP-chip by array (2)
Transcription profiling by RT-PCR (2)
Other (2)
ChIP-seq (2)
Methylation profiling by array (2)
Proteomic profiling by array (2)
RNA-seq of non coding RNA (2)
Plant - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (213)
2022 (212)
2025 (182)
2023 (172)
2024 (157)
2020 (140)
2019 (126)
2018 (96)
2017 (84)
2016 (78)
2015 (51)
2014 (47)
2011 (35)
2010 (32)
2013 (31)
2012 (27)
2026 (27)
2009 (20)
2008 (16)
2007 (9)
2006 (6)
2005 (6)
2004 (3)
2003 (3)
2002 (3)

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c-MYC target genes in HUVEC

siRNA mediated knock-down of c-MYC vs. scrambled control in human umbilical vein endothelial cells (HUVEC).

ORGANISM(S): Homo sapiens

2016-01-11 | E-MTAB-4025 | biostudies-arrayexpress

Endothelin-1 driven proliferation of PASMC is c-fos dependent

Background: Pulmonary hypertension is a rare disease characterized by pulmonary artery smooth muscle cell (PASMC) proliferation leading to vascularremodeling. Multiple factors have been associated with the vessel wall thickening. However, the responsible mechanisms are not fully understood. Aim: In ...

ORGANISM(S): Mus musculus

2014-04-11 | E-GEOD-56698 | biostudies-arrayexpress

A New Naphthopyran Derivative Combines c-Myb Inhibition, Microtubule-Targeting Effects, and Antiangiogenic Properties.

Not available

S-EPMC9661705 | biostudies-literature

The AML-associated K313 mutation enhances C/EBPα activity by leading to C/EBPα overexpression.

Not available

S-EPMC8257693 | biostudies-literature

Wilhelm2009_BistableReaction

This a model from the article: The smallest chemical reaction system with bistability Thomas Wilhelm BMC Systems Biology2009;Sep 8;3:90. 19737387, Abstract: Background Bistability underlies basic biological phenomena, such as cell...

2024-09-02 | BIOMD0000000233 | BioModels

Activation and C-C Coupling of Aryl Iodides via Bismuth Photocatalysis.

Not available

S-EPMC11773318 | biostudies-literature

Synthesis of Desepoxy-Tedanolide C.

Not available

S-EPMC8251979 | biostudies-literature

Stereoselective synthesis of dienyl-carboxylate building blocks: formal synthesis of inthomycin C.

Not available

S-EPMC3739699 | biostudies-literature

Targeting c-IAP1, c-IAP2, and Bcl-2 Eliminates Senescent Glioblastoma Cells Following Temozolomide Treatment.

Not available