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ModelsWolf2000 - Cellular interaction on glycolytic oscillations in yeast
Wolf2000 - Cellular interaction on glycolytic oscillations in yeast A two-cell model of glycolysis. This model is described in the article: Effect of cellular interaction on glycolytic oscillations in yeast: a theoretical investigation. Wolf J, Heinrich R. Biochem. J. 2000 J...
2024-09-02 | BIOMD0000000691 | BioModels
MetabolomicsWheat growth, applied water use efficiency and flag leaf metabolome under continuous and pulsed deficit irrigation

The intensity and frequency of precipitation events are predicted to change over the coming decades. For many areas, longer periods without rainfall are expected. We investigated the importance of irrigation frequency under water deficit conditions for growth, physiology and chemistry of wheat (<...

2020-09-23 | MTBLS1821 | MetaboLights
ModelsWolf2000_Glycolytic_Oscillations
Model reproduces the dynamics of ATP and NADH as depicted in Fig 4 of the paper. Model successfully tested on Jarnac and MathSBML. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain world...
2024-09-02 | BIOMD0000000206 | BioModels
TranscriptomicsComprehensive analysis of microRNA expression in the human developing brain reveals microRNA-10 as a caudalizing factor
MicroRNAs (miRNAs) have been implicated in regulating multiple processes during brain development in various species. However, the function of miRNAs in human brain development remains largely unexplored. Here, we provide a comprehensive analysis of miRNA expression of regionalized neural progenitor...
ORGANISM(S): Homo sapiens 
2015-04-23 | E-GEOD-68189 | biostudies-arrayexpress
MetabolomicsMetabolic fingerprinting reveals roles of Arabidopsis thaliana BGLU1, BGLU3, and BGLU4 in glycosylation of various flavonoids

Flavonoids are specialized metabolites that play important roles in plants, including interactions with the environment. The high structural diversity of this metabolite group is largely due to enzyme-mediated modifications of flavonoid core skeletons. In particular, glycosylation with different ...

2025-02-25 | MTBLS1965 | MetaboLights
TranscriptomicsComprehensive analysis of microRNA expression in regionalized human neural progenitor cells reveals microRNA-10 as a caudalizing factorl
MicroRNAs (miRNAs) have been implicated in regulating multiple processes during brain development in various species. However, the function of miRNAs in human brain development remains largely unexplored. Here, we provide a comprehensive analysis of miRNA expression of regionalized neural progenitor...
ORGANISM(S): Homo sapiens 
2015-10-26 | E-GEOD-71204 | biostudies-arrayexpress
ProteomicsProteome wide measurements of protein half-lives in Mycoplasma pneumoniae
We obtained proteome wide measurements of protein half-lives in M. pneumoniae by performing pulse-chase experiments following SILAC methods. We estimated degradation rates of individual proteins by measuring the increase in light protein compared to heavy protein labeling along the growth curve.
ORGANISM(S): Mycoplasma pneumoniae (strain ATCC 29342 / M129) 
2020-11-24 | PXD016386 | Pride
Degradation rates Protein half-life Silac 
ModelsKonrath2020_p53_signaling_model
The ODE model is based on Batchelor et al., Mol. Syst. Biol. 7 (2011) and was extended by introducing explicit descriptions of the transcription and translation processes of Mdm2 mRNA and Wip1 mRNA. To capture the heterogeneous single cell dynamics of p53 with an ODE model, we clustered the time cou...
2020-05-07 | MODEL2004300002 | BioModels
GenomicsgDNA-seq of 7G8 subclones with different var expression patterns
The parasite Plasmodium falciparum is responsible for severe malaria, which remains a major cause of death, particularly in sub-Saharan Africa. The reference strain NF54 (or its subclone 3D7) is commonly used for controlled human malaria infection (CHMI), but recently strains with a different geogra...
ORGANISM(S): Plasmodium falciparum 
2022-09-22 | E-MTAB-12158 | biostudies-arrayexpress
TranscriptomicsRNA-seq of 7G8 cell bank parasites
The parasite Plasmodium falciparum is responsible for severe malaria, which remains a major cause of death, particularly in sub-Saharan Africa. The reference strain NF54 (or its subclone 3D7) is commonly used for controlled human malaria infection (CHMI), but recently strains with a different geogra...
ORGANISM(S): Plasmodium falciparum 7G8 
2022-09-22 | E-MTAB-12157 | biostudies-arrayexpress
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