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MetabolomicsMetabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms

Leaf samples were obtained from Vitis vinifera ‘Malvasia Fina’ plants with well-characterized esca complex disease symptoms (n = 18) and from healthy uninfected plants (n = 6). Leaves from diseased plants were divided into three groups: asymptomatic (ASY), chlorotic (SY1), and scorched leaves (SY...

2021-11-21 | MTBLS353 | MetaboLights
ProteomicsMicrobial metaproteome data from decayed beech dead wood
Wood-decomposition in terrestrial ecosystems is a very important process with huge ecologic consequences. This decomposition process is a combination of biological respiration, leaching and fragmentation, mainly triggered by organismic activities. In order to gain a deeper insight into these microbi...
ORGANISM(S): Escherichia coli 
2020-05-27 | PXD016801 | Pride
Protein extraction Dead wood decay Fungal-bacterial community Metaproteomics 
ProteomicsEnzymatic machinery of wood-inhabiting fungi that degrade temperate tree species
Deadwood plays a crucial role in forest ecosystems, but we have limited information about the specific fungal taxa and extracellular lignocellulolytic enzymes that are actively involved in the decomposition process in situ. To investigate this, we studied the fungal metaproteome of twelve deadwood t...
ORGANISM(S): Basidiomycota sp. environmental samples <ascomycete fungi 
2024-04-22 | PXD041962 | Pride
Lpmo Peroxidases Gymnosperms Lignocellulolytic enzymes Metaproteomics Basidiomycota Deadwood decomposition Ascomycota Angiosperms Simultaneous decay Functional redundancy 
TranscriptomicsRegulation of gene expression during the onset of ligninolytic oxidation by Phanerochaete chrysosporium on colonized wood
The biodegradation of lignocellulose requires the disruption of its lignin, which shields the metabolically assimilable polysaccharides in this recalcitrant natural composite. Although a variety of microorganisms can attack lignocellulose, white rot basidiomycetes are uniquely efficient at this proc...
ORGANISM(S): Phanerochaete chrysosporium 
2015-09-16 | E-GEOD-69461 | biostudies-arrayexpress
ProteomicsPeniophora incarnata T-7 LC-MSMS
To explore the mechanism of selective degradation of lignocellulose components by P. incarnate T-7, TMT labeling quantitative proteomic analysis was performed to explore the differential expression of secretory proteins of P. incarnate T-7 by submerged fermentation on poplar wood substrate relative ...
ORGANISM(S): Peniophora incarnata 
2021-09-10 | PXD025248 | Pride
Lc-msms Submerged fermentation Peniophora incarnata t-7 
ProteomicsProteomes of wood decay Basiomycetes Phanerochaete chrysosporium RP78 [Taxon ID 273507], Rhodonia placenta MAD-698-R-SB12 [Taxon ID 670580] and Jaapia argillacea MUCL33604 [Taxon ID 933084]
Culture filtrates from three wood decay fungi were analyzed after five- and 10-days growth in submerged cultures containing 0.75 % (w/v) finely ground lodgepole pine (Pinus contorta). Significant differences in proteome profiles were observed among the species.
ORGANISM(S): Fungi Jaapia argillacea MUCL 33604 Postia placenta MAD-698-R-SB12 Phanerochaete chrysosporium RP-78 
2022-09-27 | PXD037036 | Pride
Wood decay fungi Extracellular matrix Spectral counting 
UnknownA W/Cu Synthetic Model for the Mo/Cu Cofactor of Aerobic CODH Indicates That Biochemical CO Oxidation Requires a Frustrated Lewis Acid/Base Pair.
Not available
S-EPMC9307224 | biostudies-literature
UnknownDissecting the neuroprotective interaction between the BH4 domain of BCL-w and the IP3 receptor.
Not available
S-EPMC11490406 | biostudies-literature
ProteomicsWood extraction protocol evaluation_W219_2023
Evaluation of 18 metabolites extraction protocols from wood of four tree species.
ORGANISM(S): Fraxinus Excelsior (ncbitaxon:38873) Aesculus Hippocastanum (ncbitaxon:43364) Quercus (ncbitaxon:3511) Prunus Avium (ncbitaxon:42229) 
MSV000092816 | MassIVE
ProteomicsWood degradation by Fomitiporia mediterranea M. Fischer: physiologic, metabolomic and proteomic approaches
Fomitiporia mediterranea (Fmed) is one of the main fungal species found in grapevine wood rot, also called “amadou”, one of the most typical symptoms of grapevine trunk disease Esca. This fungus is functionally classified as a white-rot, able to degrade all wood structure polymers, i.e., hemicellulo...
ORGANISM(S): Fomitiporia mediterranea 
2022-09-27 | PXD036889 | Pride
Adaptation White rot Fomitiporia mediterranea Grapevine wood Esca 
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