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TranscriptomicsStabilization competency signature
Comparison of gene expresion profile of 4 SC clones and 4 SI clones at different time points defined a stabilization competency signiture required for successful reprogramming mRNA profilling 4 SI clones at 5 time points, 4 SC clones at 6 time points, and 3 feeder samples.
ORGANISM(S): Mus musculus 
2013-01-01 | E-GEOD-42100 | biostudies-arrayexpress
TranscriptomicsMuscleblind-like proteins regulate embryonic stem cell-specific alternative splicing and reprogramming I
Previous investigations of the core gene regulatory circuitry that controls embryonic stem cell (ESC) pluripotency have largely focused on the roles of transcription, chromatin and non- coding RNA regulators. Alternative splicing (AS) represents a widely acting mode of gene regulation, yet its role ...
ORGANISM(S): Mus musculus 
2013-06-26 | E-GEOD-45503 | biostudies-arrayexpress
TranscriptomicsAn Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [protein binding microarray]
Alternative splicing (AS) is a key process underlying the expansion of proteomic diversity and the regulation of gene expression. However, the contribution of AS to the control of embryonic stem cell (ESC) pluripotency is not well understood. Here, we identify an evolutionarily conserved ESC-specifi...
ORGANISM(S): Homo sapiens 
2011-09-14 | E-GEOD-31007 | biostudies-arrayexpress
TranscriptomicsAn Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [AS microarray]
Alternative splicing (AS) is a key process underlying the expansion of proteomic diversity and the regulation of gene expression. However, the contribution of AS to the control of embryonic stem cell (ESC) pluripotency is not well understood. Here, we identify an evolutionarily conserved ESC-specifi...
ORGANISM(S): Homo sapiens 
2011-09-14 | E-GEOD-31948 | biostudies-arrayexpress
GenomicsAn Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [ChIP-Seq]
Alternative splicing (AS) is a key process underlying the expansion of proteomic diversity and the regulation of gene expression. However, the contribution of AS to the control of embryonic stem cell (ESC) pluripotency is not well understood. Here, we identify an evolutionarily conserved ESC-specifi...
ORGANISM(S): Homo sapiens 
2011-09-14 | E-GEOD-31006 | biostudies-arrayexpress
ProteomicsCouzens_Hippo_interactome_set3_P86_VS5_VS6_June22_2013
Interaction proteomics; FLAG AP-MS. Supplementary files for the Hippo Interactome manuscript by Couzens et al. This dataset consists of 20 files (specificity of MOB1 vs MOB4 and okadaic acid time course). See "README" file and sample description in the "Methods and Protocols" folder.
2013-06-22 | MSV000078446 | MassIVE
ProteomicsCouzens_Hippo_P86_VS5_VS6
This submission is part of the mass spectrometry datasets for the manuscript by Couzens et al. This submission contains files for an okadaic acid time course (association of proteins to the MOB1A bait in a phosphorylation dependent manner) and a comparison of the interactions mediated by phosphatas...
2013-06-28 | MSV000078449 | MassIVE
ProteomicsCouzens_Hippo_P103_VS1_BioID
Not available
2013-07-04 | MSV000078460 | MassIVE
ProteomicsSo_Kinase_Networks_in_TRAIL_induced_apoptosis
This submission consists of the mass spectrometry raw files for the manuscript by So et al. (Kinase Networks in TRAIL induced apoptosis). This submission contains files for the data presented as supplementary tables 5 (interaction network of 104 protein kinases in DLD-1 cells) acquired on a QSTAR E...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2015-01-09 | MSV000078989 | MassIVE
ProteomicsCouzens_Hippo_P86_VS4
Not available
2013-06-28 | MSV000078450 | MassIVE
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