Wu Long L - OmicsDI

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Unknown (5915)
Transcriptomics (511)
Proteomics (108)
Genomics (59)
Metabolomics (40)
Multiomics (3)

Organisms

Mus musculus (203)
Homo sapiens (198)
Arabidopsis thaliana (38)
Caenorhabditis elegans (25)
Rattus norvegicus (17)
Saccharomyces cerevisiae (10)
Drosophila melanogaster (8)
Zea mays (8)
Oryza sativa Japonica Group (7)
Schizosaccharomyces pombe (5)
Oryza sativa (5)
Gallus gallus (5)
Gossypium hirsutum (4)
Campylobacter jejuni (4)
Pinus radiata (3)
Triticum aestivum (3)
Danio rerio (3)
Sus scrofa (3)
Nitrosomonas europaea ATCC 19718 (2)
Zea mays subsp. mays (2)
Gasterosteus aculeatus (2)
Chlamydomonas reinhardtii (2)
Vitis vinifera (2)
Mycobacterium tuberculosis (2)
mixed sample (2)
Vibrio cholerae (2)
Pseudomonas aeruginosa (2)
Clostridioides difficile 630 (1)
Aplysina aerophoba (1)
Phaseolus coccineus (1)

Organisms

Oryza sativa (1)

Repository

biostudies-arrayexpress (569)
iProX (53)
MetaboLights (39)
pride (39)
MassIVE (9)
jPOST (3)
LINCS (3)
PanoramaPublic (3)
EGA (2)
GNPS (1)
ENA (1)

Tissue

Cell culture (13)
Brain (5)
Whole body (5)
Fibroblast (4)
Plant cell (4)
Kidney (3)
Leaf (3)
Heart (2)
Liver (2)
Lung (2)
Permanent cell line cell (2)
Spleen (2)
Stem cell (2)
Testis (2)
Blood (1)
Blood cell (1)
Bone marrow (1)
Cell (1)
Cell suspension culture (1)
Epithelial cell (1)
Exoskeleton (1)
Flower bud (1)
Haploid cell (1)
Lymphoblast (1)
Neutrophil (1)
Periodontal ligament (1)
Placenta (1)
Root (1)
Seedling (1)
Silk gland (1)

Disease

Disease free (2)
None (1)
Amyotrophic lateral sclerosis (1)
Cancer (1)
Leukemia (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (39)
Mass spectrometry (35)
Shotgun proteomics (27)
Bottom-up proteomics (6)
Chemiluminescence (3)
ELISA (3)
NMR spectroscopy (3)
Data-dependent acquisition (3)
SWATH MS (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Glycoproteomics (1)
Immunopeptidomics (1)
MSE (1)
Proteogenomics (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (22)
Liquid Chromatography MS - positive - reverse phase (19)
Liquid Chromatography MS - negative - reverse phase (15)
Illumina HiSeq 2000 (10)
N/A (6)
Illumina HiSeq 2500 (6)
Illumina HiSeq 4000 (5)
NextSeq 500 (5)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (4)
Q Exactive (4)
Liquid Chromatography MS - positive - hilic (4)
10X Genomics reagent kit (3)
Orbitrap Fusion Lumos (3)
Liquid Chromatography MS - alternating - reverse phase (3)
10X Chromium Nuclei Isolation Kit (2)
LTQ Orbitrap Elite (2)
Chromium Next GEM Single Cell Multiome Reagent Bundle (1)
10X Genomics reagents (1)
10X Chromium On-Chip Multiplex (1)
Illumina Genome Analyzer (1)
418 [Affymetrix] (1)
ScanArray Express HT [PerkinElmer] (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1000 (1)
BGISEQ-500 (1)
Q Exactive Plus (1)
6550 iFunnel Q-TOF LC/MS (1)
MALDI Synapt G2-S HDMS (1)
Orbitrap Exploris 480 (1)
SYNAPT G2-Si (1)

Publication Date

2014 (80)
2011 (79)
2015 (77)
2013 (74)
2012 (64)
2016 (50)
2010 (45)
2022 (28)
2021 (25)
2008 (25)
2023 (22)
2024 (21)
2009 (20)
2025 (19)
2026 (12)
2007 (11)
2019 (9)
2020 (8)
2018 (6)
2017 (6)
2005 (5)
2006 (4)
2003 (1)

CHEBI ID

CHEBI:17596 (16)
CHEBI:30769 (16)
CHEBI:16704 (15)
CHEBI:16919 (15)
CHEBI:17351 (15)
CHEBI:17368 (15)
CHEBI:16750 (14)
CHEBI:17992 (13)
CHEBI:15727 (13)
CHEBI:16335 (13)
CHEBI:17895 (13)
CHEBI:18089 (13)
CHEBI:16708 (12)
CHEBI:17015 (12)
CHEBI:15891 (12)
CHEBI:16015 (12)
CHEBI:30915 (12)
CHEBI:15354 (12)
CHEBI:16643 (12)
CHEBI:17295 (12)
CHEBI:30805 (11)
CHEBI:16040 (11)
CHEBI:15760 (11)
CHEBI:28875 (11)
CHEBI:28842 (11)
CHEBI:17154 (11)
CHEBI:16865 (11)
CHEBI:16566 (11)
CHEBI:16235 (11)
CHEBI:17568 (11)

Metabolite Name

Choline (8)
Creatine (8)
Hypoxanthine (8)
Betaine (7)
Adenosine (7)
Cytosine (7)
L-Tryptophan (7)
Adenine (7)
Uridine (7)
L-Tyrosine (7)
Glycine (6)
L-Lysine (6)
Ergothioneine (6)
L-Arginine (6)
Indole (6)
Xanthine (6)
Glycerophosphocholine (6)
Hippuric acid (6)
L-Phenylalanine (6)
Inosine (6)
Oxoglutaric acid (5)
Leucine (5)
AMP (5)
Thiamine (5)
Sphingosine (5)
Pyroglutamic acid (5)
Niacinamide (5)
Argininosuccinic acid (5)
Ornithine (5)
L-Asparagine (5)

First Public Date

2013 (1)

Study type

Transcription profiling by array (313)
RNA-seq of coding RNA (95)
ChIP-seq (51)
RNA-seq of non coding RNA (20)
Comparative genomic hybridization by array (17)
RNA-seq of coding RNA from single cells (11)
Methylation profiling by array (9)
Transcription profiling by RT-PCR (7)
ChIP-chip by tiling array (6)
Other (6)
Methylation profiling by high throughput sequencing (5)
Single nucleus RNA sequencing (4)
Unknown experiment type (3)
RNA-seq of total RNA (3)
Genotyping by array (2)
MicroRNA profiling by array (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
Animal - Single-cell sequencing (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
ATAC-seq (1)
RIP-seq (1)
ScATAC-seq (1)
Proteomic profiling by array (1)

Release Date

2022 (886)
2025 (857)
2023 (708)
2021 (680)
2024 (668)
2020 (484)
2019 (338)
2018 (337)
2016 (230)
2015 (228)
2017 (208)
2014 (179)
2026 (141)
2013 (139)
2011 (123)
2012 (100)
2010 (71)
2008 (41)
2009 (31)
2007 (17)
2005 (8)
2006 (6)
2001 (2)
2003 (1)
2002 (1)

Lab affiliation

Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (2)
Institute of Biophysics, Chinese Academy of Sciences (2)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Biochemistry Department, Kavli Institute for Nanoscience Discovery, University of Oxford, UK (1)
CAS Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences,China. (1)
Cancer Research Unit, Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead NSW Australia (1)
Center for Interactions of Proteins in Epithelial Transport, Department of Biomedicine, Aarhus University, Denmark (1)
Chemical and Biological Engineering Department, The Hong Kong University of Science and Technology (HKUST) (1)
Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Molecular Biology and Genetics (1)
Department of Molecular Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, NSW, Australia (1)
Department of Stomatology, Nanfang Hospital, Southern Medical University, Guangzhou, China, 510515 (1)
Departments of Genetics and Biochemistry, Geisel School of Medicine at Dartmouth, Lebanon, New Hampshire, USA (1)
Departments of Neurology and Neuroscience Mayo Clinic, Rochester, MN, USA (1)
Dept Biotecnology and life science, University of Insubria, Varese, Italy (1)
Facutly of Science, University of Geneva (1)
Henan agricultural universiy (1)
Institute of Animal Nutrition, Sichuan Agricultural University, Chengdu, China (1)
Institute of Apicultural Research (1)
Institute of Apicultural Research, Chinese Academy of Agricultural Sciences (1)
Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, No. 1 Beigou Xiangshan, Beijing, 100193, China (1)
Institute of Computing Technology, CAS (1)
Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University , Wuhan 430070, China (1)
Klinikum rechts der Isar der TU München, Munich, Germany (1)
MOE Key Laboratory of Bioinformatics, Tsinghua-Peking Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing, 100084, China (1)
MOE Key Laboratory of Gene Function and Regulation, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China (1)
Max-Planck-Institut für Molekulare Pflanzenphysiologie (1)
Nanjing Med Univ, State Key Lab Reprod Med, Dept Histol & Embryol, 101 Longmian Rd, Jiangning District, Nanjing 211166, Jiangsu, China. (1)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, China (1)

Tags

xref:PubMed:20381393 (1)

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Long-term low-dose ionizing radiation induced chromosome-aberration-specific metabolic phenotype changes in radiation workers

Long-term low-dose ionizing radiation (LLIR) widely exists in human life and has been confirmed to have potential pathogenic effects on cancer and cardiovascular diseases. However, it is technically and ethically unfeasible to explore LLIR-induced phenotypic changes in the human cohort, leading t...

2022-04-07 | MTBLS3854 | MetaboLights

3C-seq of HT29 cells with CCAT1-L knockdown or scramble knockdown

CCAT1-L is a highly expressed long noncoding RNA located in the colorectal cancer specific super enhance region about 500 kb upstream of MYC gene. Knockdown of CCAT1-L significantly down-regulated interaction frequency between CCAT1 and MYC locus and repress MYC expression, suggesting a long-range c...

ORGANISM(S): Homo sapiens

2014-02-22 | E-GEOD-55261 | biostudies-arrayexpress

Gene expression profiles of MCF-7 cells treated with Si-Wu-Tang, estradiol and ferulic acid

Traditional Chinese medicines (TCM), usually composed of a mixture of components, may simultaneously target multiple genes/pathways and thus achieve superior efficacy for complex diseases such as cancer. To identify novel mechanisms of action and potential health benefits for a TCM formula Si-Wu-Tan...

ORGANISM(S): Homo sapiens

2011-05-18 | E-GEOD-23610 | biostudies-arrayexpress

RNA-seq from paired human CRC/control mucosa samples

We have used RNA-seq to examine gene expression from paired human CRC/control mucosa samples and identified CRC-specific expressed long noncoding RNAs To identify CRC-specific expressed genes, including long noncoding RNAs

ORGANISM(S): Homo sapiens

2014-02-22 | E-GEOD-55259 | biostudies-arrayexpress

DNA Methylation Mediated by a MicroRNA Pathway

In plants, the known microRNAs (miRNAs) are produced as ~21 nucleotide (nt) duplexes from their precursors by Dicer like 1 (DCL1). They are incorporated into Argonaute 1 (AGO1) protein to regulate target gene expression primarily through mRNA cleavage. We report here the discovery of a new class of ...

ORGANISM(S): Oryza sativa

2010-03-12 | E-GEOD-20748 | biostudies-arrayexpress

Transcription profiling of Arabidopsis plants grown under diurnal or circadian conditions

Transcript profiling was performed on samples derived from plants grown under long day conditions. Time series were harvested under diurnal (L/D; light/dark cycles) at control temperature (20 C) and cold (4 C); and under circadian conditions (L/L; continuous light) at control temperature (20 C). Lea...

ORGANISM(S): Arabidopsis thaliana

2010-12-20 | E-MEXP-2526 | biostudies-arrayexpress

Complete Genome Sequences of Two WU Polyomaviruses Detected in Pediatric Patients with Fatal Respiratory Infection.

Not available

S-EPMC8428254 | biostudies-literature

L-Myc expression by dendritic cells is required for optimal T-cell priming

The transcription factor IRF8 is a critical regulator of plasmacytoid dendritic cell (pDC) and classical dendritic cell (cDC) development in both mouse and man. Yet the downstream molecular targets that regulate DC homeostasis and development are largely unknown. A recent study using gene expressi...

ORGANISM(S): Mus musculus

2013-12-14 | E-GEOD-53311 | biostudies-arrayexpress

Transcriptome and volatile compounds analyses of floral development provide insight into floral scent formation in Paeonia lactiflora 'Wu Hua Long Yu'.

Not available

S-EPMC10904628 | biostudies-literature

Patterns of dioxin-altered mRNA expression in livers of dioxin-sensitive versus dioxin-resistant rats

The dioxin congener 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) causes a wide range of toxic effects in rodent species, all of which are mediated by a ligand-dependent transcription-factor, the aryl hydrocarbon receptor (AHR). The Han/Wistar (Kuopio) (H/W) strain shows exceptional resistance to many ...

ORGANISM(S): Rattus norvegicus

2011-11-14 | E-GEOD-13513 | biostudies-arrayexpress

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