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TranscriptomicsTranslational control: a new dimension in the regulation of Arabidopsis photomorphogenesis
The environmental “light” plays a vital role in regulating the plant growth and development. Transcriptomic profilings were widely used to examine how light regulates the changes of mRNA populations at a genome-wide scale. However, it remains unclear if translational regulation represents a new dime...
ORGANISM(S): Arabidopsis thaliana 
2012-07-10 | E-GEOD-29657 | biostudies-arrayexpress
TranscriptomicsTranslational landscape of photomorphogenic Arabidopsis
We report the application of ribosome profiling method to map ribosome locations on transcripts in de-etiolating Arabidopsis seedlings Examine steady-state mRNA and ribosome-protected mRNA abundance in 4-day-old etiolated seedlings with/without 4-h light treatment
ORGANISM(S): Arabidopsis thaliana 
2013-11-08 | E-GEOD-43703 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of dark-grown cop1 and cop1BBX22-GFPox plants
The proper accumulation of BBX22 mediated by COP1 is crucial for plants to maintain better growth fitness when growing in the dark environment as well as responding to seasonal changes in day-length. The constitutive-photomorphogenic development of the cop1 mutant is enhanced in cop1BBX22-GFPox pla...
ORGANISM(S): Arabidopsis thaliana 
2011-06-01 | E-GEOD-22983 | biostudies-arrayexpress
TranscriptomicsAtbZIP16 integrates light and hormone signaling pathways to regulate Arabidopsis early seedling development
In response to environmental light signals, transcriptomic adjustment plays an important role in Arabidopsis seed germination and seedling development. G-box cis-element is commonly present in promoters of genes positively or negatively responding to the light signal. For the pursuit of additional t...
ORGANISM(S): Arabidopsis thaliana 
2013-07-22 | E-GEOD-30910 | biostudies-arrayexpress
ProteomicsUnveiling previously undescribed circadian clock regulators and action mechanisms via TurboID-based profiling of the LWD1 interactome in Arabidopsis thaliana
The synchronization of the internal circadian clock with the external 24-h diurnal cycle is critical for ensuring optimal plant growth fitness. Despite lacking a DNA binding domain, LIGHT-REGULATED WD proteins (LWDs) are essential for sustaining and fine-tuning circadian rhythm1,2. However, the acti...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2026-07-21 | PXD062258 | Pride
Circadian clock Photomorphogenesis Turboid Proximality labeling Photoperiodic flowering Lwd1 
TranscriptomicsNatural selection on cis and trans regulation in yeasts
Gene expression is regulated both by cis elements, which are DNA segments closely linked to the genes they regulate, and by trans activating factors, which are usually proteins capable of diffusing to unlinked genes. Understanding the patterns and sources of regulatory variation is crucial for under...
ORGANISM(S): Saccharomyces cerevisiae 
2010-04-02 | E-GEOD-20749 | biostudies-arrayexpress
UnknownImputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33.
Not available
S-EPMC4240198 | biostudies-literature
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