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TranscriptomicsChromosome wide analysis of parental allele specific chromatin and DNA methylation in mouse
This SuperSeries is composed of the following subset Series: GSE26720: Chromosome wide analysis of parental allele specific chromatin and DNA methylation GSE26891: Chromosome wide analysis of parental allele specific chromatin and DNA methylation along mouse distal chr7 GSE26892: Chromosome wide ana...
ORGANISM(S): Mus musculus 
2011-03-31 | E-GEOD-26947 | biostudies-arrayexpress
TranscriptomicsDefault DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Mus musculus 
2013-07-31 | E-GEOD-46954 | biostudies-arrayexpress
TranscriptomicsChromosome wide analysis of parental allele specific chromatin and DNA methylation along the central part of mouse chr7
Imprinted genes are monoallelically expressed according to parental inheritance. The maternally and paternally inherited alleles are distinguished epigenetically by DNA methylation and histone modifications. Chromosome-wide Chromatin immunoprecipitation (ChIP) and MIRA analysis of MatDup.dist7 and ...
ORGANISM(S): Mus musculus 
2011-03-31 | E-GEOD-26892 | biostudies-arrayexpress
TranscriptomicsChromosome wide analysis of parental allele specific chromatin and DNA methylation along mouse distal chr15
Imprinted genes are monoallelically expressed according to parental inheritance. The maternally and paternally inherited alleles are distinguished epigenetically by DNA methylation and histone modifications. Chromosome-wide Chromatin immunoprecipitation (ChIP) and MIRA analysis of MatDup.dist7 and ...
ORGANISM(S): Mus musculus 
2011-03-31 | E-GEOD-26893 | biostudies-arrayexpress
TranscriptomicsChromosome wide analysis of parental allele specific chromatin and DNA methylation along mouse distal chr7
Imprinted genes are monoallelically expressed according to parental inheritance. The maternally and paternally inherited alleles are distinguished epigenetically by DNA methylation and histone modifications. Chromosome-wide Chromatin immunoprecipitation (ChIP) and MIRA analysis of MatDup.dist7 and ...
ORGANISM(S): Mus musculus 
2011-03-31 | E-GEOD-26891 | biostudies-arrayexpress
TranscriptomicsFZD7 Plays a Critical Role in Triple Negative Breast Cancer Proliferation
Breast cancer is genetically and clinically heterogeneous. Triple negative cancer (TNBC) is a subtype of breast cancer usually associated with poor outcome and lack of benefit from target therapy. A pathway analysis in a microarray study was performed using TNBC compared with non-triple negative bre...
ORGANISM(S): Homo sapiens 
2011-06-01 | E-GEOD-27447 | biostudies-arrayexpress
TranscriptomicsDNA methylation profiling of ductal carcinoma in situ (DCIS)
Methylated genomic fragments from tumor DNA and matching normal control were enriched with the methylated-CpG island recovery assay (MIRA); amplified, labeled and hybridized on Agilent CpG island tiling oligo arrays. MIRA enriched samples from tumor were labeled with Cy5 while MIRA enriched DNA samp...
ORGANISM(S): Homo sapiens 
2010-05-05 | E-GEOD-14865 | biostudies-arrayexpress
TranscriptomicsCharacterization of the Imprinting Signature of Mouse Embryo Fibroblasts by RNA Deep Sequencing
Mouse embryo fibroblasts (MEFs) closely resemble mouse embryos and are convenient sources for biochemical studies when cell number may be limiting from mouse embryos. To derive the imprinting signature of MEFs and potentially detect novel imprinted genes we characterized them using strand- and allel...
ORGANISM(S): Mus musculus 
2013-11-18 | E-GEOD-49538 | biostudies-arrayexpress
TranscriptomicsMethylation profiling of lung squamous cell carcinomas vs surrounding normal tissue
Methylated genomic fragments from tumor and matching normal DNA were enriched with the methylated-CpG island recovery assay (MIRA); amplified, labeled and hybridized on Agilent CpG island tiling oligo arrays. Samples from tumor were labeled with Cy5 while the matching normal were labeled with Cy3 so...
ORGANISM(S): Homo sapiens 
2010-05-25 | E-GEOD-9622 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of mouse cerebral cortical neural progenitor cells
Transcriptome analysis of neural progenitor/stem cells is limited by the lack of a reliable method for cell isolation. We have designed a genetic dual reporter strategy that can allow prospective isolation of cortical neural progenitor cells and their neuronal progeny form the same animals. These ce...
ORGANISM(S): Mus musculus 
2011-09-19 | E-GEOD-22946 | biostudies-arrayexpress
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