Xi - OmicsDI

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Organisms

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salt lake metagenome (1)
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Technology Type

Mass Spectrometry (168)
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Instrument Platform

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Publication Date

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2003 (1)
2002 (1)

UNIPROT ID/AC

OTOGL_MOUSE (2)
ZRAN1_MOUSE (2)
F6QRE9_MOUSE (2)
TTL11_MOUSE (2)
SAXO2_MOUSE (2)
GRCR1_MOUSE (2)
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ACBD7_MOUSE (2)
A0A087WQ89_MOUSE (2)
Q9LIE5 (1)
O24646 (1)
Q9FFA7 (1)
Q9LTJ6 (1)
Q9FN03 (1)
Q8LGH4 (1)
Q9M086 (1)
Q9SYX2 (1)
P43254 (1)
P35567 (1)
P24033 (1)

CHEBI ID

CHEBI:30769 (6)
CHEBI:16411 (4)
CHEBI:15428 (4)
CHEBI:16119 (4)
CHEBI:16865 (4)
CHEBI:18012 (4)
CHEBI:15756 (4)
CHEBI:17351 (4)
CHEBI:16796 (3)
CHEBI:26984 (3)
CHEBI:33508 (3)
CHEBI:27693 (3)
CHEBI:15611 (3)
CHEBI:17202 (3)
CHEBI:17858 (3)
CHEBI:22660 (3)
CHEBI:18186 (3)
CHEBI:29864 (3)
CHEBI:9300 (3)
CHEBI:17361 (3)
CHEBI:16977 (3)
CHEBI:28875 (3)
CHEBI:17754 (3)
CHEBI:15741 (3)
CHEBI:30746 (3)
CHEBI:28790 (3)
CHEBI:16031 (3)
CHEBI:26158 (1)
CHEBI:27732 (1)
CHEBI:29108 (1)

Metabolite Name

Creatine (9)
Taurine (8)
Thiamine (7)
Oleamide (7)
Adenosine (7)
Oleic acid (7)
Hypoxanthine (7)
Dimethylglycine (6)
Betaine (6)
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Azelaic acid (6)
Xanthine (6)
Creatinine (6)
Daunorubicin (5)
Histidine (5)
Leucine (5)
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Carnitine (5)
L-Arginine (5)
Serotonin (5)
Pantothenic acid (5)
L-Histidine (5)
Xanthosine (5)
Cytosine (5)

First Public Date

2025 (86)
2026 (59)
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2014 (25)
2017 (17)
2019 (16)
2020 (15)
2013 (14)
2016 (12)
2018 (11)
2015 (10)

Modelling Approach

Ordinary differential equation model (8)

Study status

Completed (4)
Recruiting (2)
Active, not recruiting (1)

Lab affiliation

1 Department of Cardiac Surgery, Fujian Medical University Union Hospital, Fuzhou, China 2 Department of Toxicology, Fujian Center for Evaluation of New Drug, Fujian Medical University, Fuzhou, China (4)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (4)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (4)
Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany (3)
University of Edinburgh (3)
1. Wellcome Trust Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, UK 2. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Germany (2)
Universität Hohenheim (260b) Systembiologie der Pflanze Garbenstraße 30, Bio1 U2 70599 Stuttgart (2)
School of Life Sciences, Tsinghua University, China (2)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany (2)
Wellcome Trust Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, UK Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Germany (2)
Occupational and Environmental Medicine Center, and Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden. (2)
Department of Plant Systems Biology, University of Hohenheim, 70593 Stuttgart, Germany (2)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. Wellcome Center for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom. (1)
Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK; Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. (1)
University of Edinburgh; Technische Universität Berlin (1)
Shenzhen Institute of Advanced Technology (SIAT), Chinese Academy of Sciences (1)
MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China. (1)
College of Polymer Science and Engineering, State Key Laboratory of Polymer Materials Engineering, Sichuan University, Chengdu, 610065, People’s Republic of China (1)
Technischen Universität Berlin wellcome trust centre for cell biology, University of Edinburgh (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany (1)
The School of Biomedical Sciences, Queesnland University of Technology, Australia (1)
1Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh 2Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, 13355, Germany (1)
Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS)/National Key Facility for Crop Gene Resources and Genetic Improvement, Beijing, China (1)
Laboratory of Molecular Genetics and Biochemistry, Mental Health Research Institute, Tomsk National Research Medical Center of the Russian Academy of Sciences (1)
Institute of Biomedical Chemistry laboratory of microsomal oxidation (1)
Center of Systems Biology, Biomedical Research Foundation, Academy of Athens, Greece (1)
1. Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK 2. Technical University, Berlin 13355, Germany (1)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI) (1)
Ultrasound Department, The Second Affiliated Hospital of Fujian University of Traditional Chinese Medicine (1)
Institute of Neuroimmunology, Slovak Academy of Sciences (1)

Keyword

CROHN (1)
Ulcerative (1)
Rectal (1)
Robotic surgery (1)
Single port (1)
Intuitive SP platform (1)
Colorectal (1)
Rectum (1)
Colorectal surgery (1)

IsPrivate

False (10)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (5)
protozoa (2)

Modification

71.037114 (1)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (4426)
RNA-seq of coding RNA (1197)
ChIP-seq (874)
RNA-seq of coding RNA from single cells (215)
Other (185)
RNA-seq of non coding RNA (124)
ChIP-chip by tiling array (123)
Methylation profiling by high throughput sequencing (110)
Methylation profiling by array (90)
Comparative genomic hybridization by array (81)
RNA-seq of total RNA (77)
Unknown experiment type (45)
Cell line - High-throughput sequencing (44)
MicroRNA profiling by array (43)
DNA-seq (38)
ChIP-chip by array (36)
ATAC-seq (31)
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Human - High-throughput sequencing (14)
Cell line - One-color microarray (14)
Animal - High-throughput sequencing (13)
Proteomic profiling by array (12)
RIP-seq (10)
ScATAC-seq (9)
CUT&RUN (9)
Transcription profiling by SAGE (8)
Baseline (8)

Release Date

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2004 (34)
2003 (10)
2002 (10)
2000 (6)
1999 (5)
2001 (3)
1998 (2)
1992 (1)

Location

Australia (2)
Japan (2)
Germany (1)
United States (1)
United Kingdom (1)
France (1)

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Large Scale Profling in Muscle Tissue for Muscle Wasting in Cancer Cachexia (part-XI)

Not available

ORGANISM(S): Homo sapiens

ST001017 | MetabolomicsWorkbench

Amino Acid Metabolites of Dietary Salt Effects on Blood Pressure in Rat Urine and Kidney Tissue (part XI)

Not available

ORGANISM(S): Rattus norvegicus

ST000638 | MetabolomicsWorkbench

Xi Zang

Xi Zang Raw sequence reads

PRJNA1440896 | ENA

Transcription profiling of Arabidopsis with post-transcriptionally silenced Myosin XI-K

This study was aimed to determine roles of individual myosins in organelle trafficking in plant cell. Expression of Myosin XI-K was suppressed in transgenic A.thaliana by using RNAi approach. To ensure that the RNAi-induced gene silencing was specific and did not affect expression of other myosins,...

ORGANISM(S): Arabidopsis thaliana

2008-06-13 | E-GEOD-5431 | biostudies-arrayexpress

GENCODE PCR-Seq Batch XI

PRJEB1471 | ENA

A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation

The inactive X chromosome (Xi) serves as a model to understand gene silencing on a global scale. Here, we perform identification of direct RNA interacting proteins? (iDRiP) to isolate a comprehensive protein interactome for Xist, an RNA required for Xi silencing. We discover multiple classes of inte...

ORGANISM(S): Mus musculus

2015-06-19 | E-GEOD-67516 | biostudies-arrayexpress

Saccharum spontaneum cultivar:Guang Xi 87-21

Saccharum spontaneum Guang Xi 87-21 Gene Expression Profiling - Sp2_G.Xi87-21_LF_3 transcriptome

PRJNA1388633 | ENA

Saccharum spontaneum cultivar:Guang Xi 87-21

Saccharum spontaneum Guang Xi 87-21 Gene Expression Profiling - Sp2_G.Xi87-21_LF_2 transcriptome

PRJNA1389017 | ENA

Saccharum spontaneum cultivar:Guang Xi 87-21

Saccharum spontaneum Guang Xi 87-21 Gene Expression Profiling - Sp2_G.Xi87-21_LF_1 transcriptome

PRJNA1388235 | ENA

ER network dynamics are differentially controlled by myosins XI-K, XI-C, XI-E, XI-I, XI-1, and XI-2.