Xiao Run R - OmicsDI

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Unknown (71)
Proteomics (13)
Metabolomics (12)
Transcriptomics (8)

Organisms

Homo sapiens (9)
Mus musculus (8)
Zea mays (1)
Rattus norvegicus (1)
Staphylococcus aureus (1)
Sus scrofa domesticus (1)

Repository

pride (13)
MetaboLights (12)
biostudies-arrayexpress (8)

Tissue

Cell culture (3)
Blood plasma (2)
Brain (2)
B cell (1)
Bone (1)
Brown adipose tissue (1)
Liver (1)
Permanent cell line cell (1)
T cell (1)
Thyroid gland (1)
Wound fluid (1)

Disease

Acute leukemia (2)
Bone osteosarcoma (1)
Glycogen storage disease (1)
Multiple sclerosis (1)
Thyroid gland anaplastic carcinoma (1)

Technology Type

Mass Spectrometry (13)
Mass spectrometry (10)
Shotgun proteomics (6)
Bottom-up proteomics (3)
Mass spectrometry assay (2)
Data-independent acquisition (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Proteogenomics (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
UPLC Q-TOF Premier (Waters) (2)
Chromium Controller / Agilent Bioanalyzer (1)
Chromium Controller (1)
None (1)
Illumina NovaSeq 6000 (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - positive - high-polarity (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)
Q Exactive (1)
Wates I-Class/XEVO-G2 XS QTOF (1)

Publication Date

2026 (5)
2024 (4)
2025 (3)
2009 (3)
2023 (3)
2016 (2)
2015 (2)
2013 (2)
2020 (2)
2019 (2)
2022 (2)
2012 (1)
2021 (1)

CHEBI ID

CHEBI:116314 (4)
CHEBI:16525 (4)
CHEBI:16113 (3)
CHEBI:16196 (3)
CHEBI:16244 (3)
CHEBI:16393 (3)
CHEBI:16566 (3)
CHEBI:16742 (3)
CHEBI:16919 (3)
CHEBI:17351 (3)
CHEBI:17687 (3)
CHEBI:17750 (3)
CHEBI:17768 (3)
CHEBI:27471 (3)
CHEBI:28116 (3)
CHEBI:28865 (3)
CHEBI:28867 (3)
CHEBI:28875 (3)
CHEBI:30769 (3)
CHEBI:30805 (3)
CHEBI:32425 (3)
CHEBI:47876 (3)
CHEBI:53486 (3)
CHEBI:55328 (3)
CHEBI:64395 (3)
CHEBI:6650 (3)
CHEBI:70976 (3)
CHEBI:71466 (3)
CHEBI:72689 (3)
CHEBI:73731 (3)

Metabolite Name

Malic acid (3)
(R)-1-O-[b-D-Apiofuranosyl-(1->2)-b-D-glucopyranoside]-1,3-octanediol (2)
1,7-Dimethylguanosine (2)
1-(Hydroxymethyl)-5,5-dimethyl-2,4-imidazolidinedione (2)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (2)
1-Methylguanine (2)
1-Pyrroline-5-carboxylic acid (2)
13'-Carboxy-alpha-tocopherol (2)
13'-Carboxy-alpha-tocotrienol (2)
2,3-Diaminosalicylic acid (2)
2,4-Diamino-6,7-dimethoxyquinazoline (2)
2,5-Octadien-1-ol (2)
2-Heptylbenzothiazole (2)
2-Hydroxy-3-(4-hydroxyphenyl)propenoic acid (2)
2-Hydroxy-4-methoxyacetophenone 5-sulfate (2)
2-Octenedioic acid (2)
20, 22-Dihydrodigoxigenin (2)
3 Hydroxycoumarin (2)
3'-Hydroxystanozolol (2)
3,4-Dihydro-2H-1-benzopyran-2-one (2)
3,7,8,15-Scirpenetetrol (2)
3-(1,1-Dimethyl-2-propenyl)-8-(3-methyl-2-butenyl)xanthyletin (2)
3-Hydroxytetradecanedioic acid (2)
4-Hydroxy-2-butenoic acid gamma-lactone (2)
4-Hydroxystyrene (2)
4-oxo-Retinoic acid (2)
6'-Sialyllactose (2)
6-Ketoprostaglandin E1 (2)
9,10,13-TriHOME (2)
Abacavir (2)

Study type

Transcription profiling by array (4)
RNA-seq of coding RNA (3)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (15)
2024 (12)
2022 (12)
2023 (10)
2021 (5)
2009 (4)
2026 (4)
2020 (4)
2017 (3)
2016 (2)
2015 (2)
2013 (2)
2012 (2)
2019 (2)

Lab affiliation

Allegheny Health Network Cancer Institute (1)
Chemical and Biological Engineering Department, The Hong Kong University of Science and Technology (HKUST) (1)
Chengdu University of Traditional Chinese Medicine (1)
College of Life Sciences, Hunan Normal University (1)
Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha NE (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
Department of Pediatrics, University of Groningen, University Medical Center Groningen; Groningen, The Netherlands (1)
Department of Systems Biology, City of Hope Comprehensive Cancer Center, CA, USA (1)
Guangxi Medical University (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences; College of Earth and Planetary Sciences, University of Chinese Academy of Sciences; Key Research Base on Paleolithic Human Evolution and Paleogenetics (IVPP), SACH (1)
Proteomics Unit at University of Bergen (PROBE), Department of Biomedicine, University of Bergen, Norway. (1)
Translational Genomic Research Institute (1)

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Asset pricing with long-run disaster risk.

Not available

S-EPMC10298804 | biostudies-literature

Illumina mRNA-Seq of control and hnRNP H knockdown in 293T cells

Pre-mRNA splicing is regulated through combinatorial activity of RNA motifs including splice sites and splicing regulatory elements (SREs). Here, we show that the activity of a major class of mammalian SREs is highly sensitive to the strength of the adjacent 5' splice site (5'ss) sequence, and that...

ORGANISM(S): Homo sapiens

2009-09-12 | E-GEOD-16642 | biostudies-arrayexpress

Helicobacter pylori CagA elevates FTO to induce gastric cancer progression via a "hit-and-run" paradigm.

Not available

S-EPMC12067399 | biostudies-literature

SR Proteins Collaborate with 7SK and Promoter-Associated Nascent RNA to Release Paused Polymerase

RNAP II is frequently paused near gene promoters in mammals and its transition to productive elongation requires active recruitment of P-TEFb, a cyclin-dependent kinase for RNAP II and other key transcription elongation factors. A fraction of P-TEFb is sequestered in an inhibitory complex containing...

ORGANISM(S): Mus musculus

2013-05-09 | E-GEOD-45517 | biostudies-arrayexpress

Genomic Characterization of a Carbapenem-Resistant Raoultella planticola Strain Co-Harboring bla_IMP-4 and bla_SHV-12 Genes.

Not available

S-EPMC10981896 | biostudies-literature

Successful treatment of hemophagocytic intravascular large B-cell lymphoma with CNS involvement with BTK inhibitor combined with rituximab and high-dose methotrexate.

Not available

S-EPMC11325336 | biostudies-literature

CEBPA mutants down-regulate AML cell susceptibility to NK-mediated lysis by disruption of the expression of NKG2D ligands, which can be restored by LSD1 inhibition.

Not available

S-EPMC8741297 | biostudies-literature

Testicular germ cell tumor susceptibility genes from the consomic 129.MOLF-Chr19 mouse strain

Chromosome substitution strains (CSS or consomic strains) are useful for mapping phenotypes to chromosomes. However, huge efforts are needed to identify the gene(s) responsible for the phenotype in the complex context of the chromosome. Here, we report the identification of candidate disease genes...

ORGANISM(S): Mus musculus

2009-01-13 | E-GEOD-14354 | biostudies-arrayexpress

Association of the polymorphisms of the cholesteryl ester transfer protein gene with coronary artery disease: a meta-analysis.

Not available

S-EPMC10749314 | biostudies-literature

Effect of Adjuvant Radiation Dose on Survival in Patients with Esophageal Squamous Cell Carcinoma.

Not available

S-EPMC9736548 | biostudies-literature