Xiao X X - OmicsDI

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Unknown (17720)
Proteomics (584)
Transcriptomics (241)
Metabolomics (78)
Genomics (67)
Models (5)

Organisms

Homo sapiens (399)
Mus musculus (221)
Rattus norvegicus (23)
Oryza sativa (16)
Arabidopsis thaliana (13)
Saccharomyces cerevisiae (12)
Drosophila melanogaster (9)
Triticum aestivum (5)
Caenorhabditis elegans (4)
Zea mays (3)
Sus scrofa (3)
synthetic construct (2)
Streptococcus suis (2)
Oryza sativa Japonica Group (2)
Escherichia coli K-12 (1)
Shewanella piezotolerans WP3 (1)
(Populus alba x Populus glandulosa) x Populus tomentosa (1)
Pteropus alecto (1)
Brassica oleracea (1)
Cordyceps militaris (1)
Paralichthys olivaceus (1)
Metarhizium acridum (1)
Solanum pimpinellifolium (1)
Cronobacter sakazakii ATCC BAA-894 (1)
Capra hircus (1)
Streptococcus mutans (1)
Bemisia tabaci (1)
Pseudomonas syringae pv. tomato str. DC3000 (1)
Zea mays subsp. mays (1)
Taeniopygia guttata (1)

Organisms

Mus musculus (6)

Repository

pride (288)
biostudies-arrayexpress (275)
iProX (259)
MetaboLights (74)
PAXDB (21)
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NODE (13)
EGA (12)
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geo (1)
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Tissue

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CNS neuron (sensu Vertebrata) (2)
Mixed tissue (1)

Disease

Disease free (13)
Acute leukemia (7)
Wounds and Injuries (5)
Alzheimer's disease (4)
Breast cancer (3)
Cardiovascular system disease (3)
Colon cancer (3)
Hepatocellular carcinoma (3)
Type 2 diabetes mellitus (3)
Autism spectrum disorder (2)
Cervix carcinoma (2)
Liver cancer (2)
Lung cancer (2)
Melanoma and neural system tumor syndrome (2)
Non-small cell lung carcinoma (2)
Prostate adenocarcinoma (2)
Postnatal day 18 was the earliest time point at which structural differences between testes from wild-type and pcd3J-/- mice were observed via histopathology. (1)
Adenocarcinoma (1)
Ankylosing spondylitis (1)
Bacterial infectious disease (1)
Bacterial sepsis (1)
Brain cancer (1)
Brain ischemia (1)
Breast abscess (1)
Burkitt lymphoma (1)
COVID-19 (1)
Cholangiocarcinoma (1)
Connective tissue disease (1)
Enteritis (1)
Insulinoma (1)

Technology Type

Mass Spectrometry (288)
Shotgun proteomics (138)
Mass spectrometry (50)
Bottom-up proteomics (48)
Affinity purification coupled with mass spectrometry proteomics (36)
Data-dependent acquisition (34)
Mass spectrometry assay (19)
Data-independent acquisition (17)
Gel-based experiment (17)
SWATH MS (8)
Proteogenomics (7)
Top-down proteomics (7)
NMR spectroscopy (5)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SRM/MRM (3)
All-ion fragmentation (2)
Immunopeptidomics (2)
MSE (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina OncoArray (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (27)
Liquid Chromatography MS - positive - reverse phase (26)
Liquid Chromatography MS - positive - reverse-phase (8)
Liquid Chromatography MS - negative - reverse-phase (7)
Liquid Chromatography MS - positive - hilic (7)
Illumina NovaSeq 6000 (3)
Orbitrap Fusion Lumos (3)
Illumina HiSeq 2000 (2)
Orbitrap Exploris 120 (2)
Q Exactive HF (2)
Q Exactive HF-X (2)
TripleTOF 6600 (2)
Q Exactive Plus (2)
Chromium Controller / Agilent Bioanalyzer (1)
Chromium Controller (1)
None (1)
Applied Biosystems 1700 Chemiluminescent Microarray Analyzer (1)
Axon- GenePix4000B (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive (1)

Publication Date

2025 (100)
2022 (95)
2023 (95)
2024 (93)
2021 (87)
2020 (71)
2026 (62)
2014 (54)
2015 (39)
2013 (39)
2012 (34)
2016 (33)
2010 (31)
2019 (28)
2018 (17)
2011 (17)
2017 (15)
2008 (12)
2009 (10)
2006 (4)
2007 (3)
2005 (1)

UNIPROT ID/AC

1433B_HUMAN (17)
1433E_HUMAN (17)
1433F_HUMAN (17)
1433G_HUMAN (17)
1433S_HUMAN (17)
1433T_HUMAN (17)
1433Z_HUMAN (17)
2A5A_HUMAN (17)
2A5D_HUMAN (17)
2A5E_HUMAN (17)
2A5G_HUMAN (17)
2AAA_HUMAN (17)
2ABA_HUMAN (17)
2ABD_HUMAN (17)
3BHS2_HUMAN (17)
3BP1_HUMAN (17)
O24646 (1)
P00573 (1)
P07659 (1)
P0A6P1 (1)
P0CE47 (1)
P42212 (1)
P43254 (1)
Q8LGH4 (1)
Q9FFA7 (1)
Q9FN03 (1)
Q9LIE5 (1)
Q9LTJ6 (1)
Q9M086 (1)
Q9SYX2 (1)

CHEBI ID

CHEBI:30769 (17)
CHEBI:15756 (15)
CHEBI:16704 (15)
CHEBI:16919 (12)
CHEBI:17154 (12)
CHEBI:17351 (12)
CHEBI:17368 (12)
CHEBI:28875 (12)
CHEBI:16196 (11)
CHEBI:16708 (11)
CHEBI:17568 (11)
CHEBI:17596 (11)
CHEBI:17750 (11)
CHEBI:17895 (11)
CHEBI:27897 (11)
CHEBI:28044 (11)
CHEBI:28716 (11)
CHEBI:48131 (11)
CHEBI:55328 (11)
CHEBI:15354 (10)
CHEBI:15428 (10)
CHEBI:16856 (1)
CHEBI:17535 (1)
CHEBI:29132 (1)
CHEBI:32635 (1)
CHEBI:32636 (1)
CHEBI:32639 (1)
CHEBI:33697 (1)
CHEBI:33699 (1)
CHEBI:46195 (1)

Metabolite Name

Hypoxanthine (16)
Inosine (16)
Uridine (15)
Adenine (14)
L-Phenylalanine (14)
L-Tyrosine (14)
Azelaic acid (13)
Creatine (13)
Guanosine (13)
Palmitic acid (13)
Adenosine (12)
Citric acid (12)
L-Histidine (12)
Linoleic acid (12)
Riboflavin (12)
Thymidine (12)
Uracil (12)
Creatinine (11)
Spermidine (11)
Cholic acid (10)
Deoxycholic acid (10)
Deoxycytidine (10)
L-Methionine (10)
L-Threonine (10)
L-Tryptophan (10)
Oleic acid (10)
Pantothenic acid (10)
Taurine (10)
Fumaric acid (9)
Glutaric acid (9)

IsPrivate

False (4)

First Public Date

2016 (4)
2019 (1)
2017 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (3)
Steady-state model (1)

Study type

Transcription profiling by array (128)
RNA-seq of coding RNA (60)
ChIP-seq (31)
Comparative genomic hybridization by array (13)
RNA-seq of non coding RNA (12)
Other (9)
Methylation profiling by array (4)
Methylation profiling by high throughput sequencing (4)
ChIP-chip by tiling array (3)
ChIP-chip by array (3)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2025 (2815)
2022 (2525)
2023 (2295)
2024 (2156)
2021 (1841)
2020 (1276)
2019 (988)
2018 (825)
2017 (714)
2016 (600)
2015 (428)
2026 (420)
2014 (326)
2013 (203)
2012 (182)
2011 (120)
2010 (97)
2009 (71)
2008 (46)
2007 (24)
2006 (16)
2005 (14)
2004 (5)
2003 (3)
2002 (2)
2001 (2)
2000 (1)

Lab affiliation

The University of Melbourne (6)
Center of Molecular and Cellular Oncology, Yale University (4)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (3)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
Key Laboratory of Brain Functional Genomics of Shanghai and Ministry of Education, Institute of Brain Functional Genomics, School of Life Science and the Collaborative Innovation Center for Brain Science, East China Normal University, Shanghai, China (3)
National Engineering Research Center for the Emergency Drug, Beijing Institute of Pharmacology and Toxicology, Beijing 100850, China (3)
State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan,Hubei 430062, China (3)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Department of Clinical Laboratory Medicine, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (2)
Department of Fisheries, College of Animal Science and Technology, Hunan agriculture university (2)
Department of Molecular Biology and Endocrinology, “VINČA”, Institute of Nuclear Sciences - National Institute of thе Republic of Serbia, University of Belgrade, Belgrade, Serbia (2)
Guangdong Pharmaceutical University (2)
Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College, 210042 Nanjing, China. (2)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (2)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences (2)
Mayo Clinic, Department of Oncology (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
Shanghai Institute of Thoracic Tumors, Shanghai Chest Hospital, Shanghai, 200030, China. (lab head) (2)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China (2)
State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, No.1 West Beichen Rd., Beijing 100101, China (2)
State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, No.1 West Beichen Rd., Beijing 100101, China. (2)

Tags

xref:PubMed:27027282 (4)
xref:PubMed:21690297 (1)
xref:PubMed:28241004 (1)

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Transcription profiling of mouse mammary gland of Brca and p53 mutants to identifu Brca1 regulated X-linked genes

We compared the expression levels of X-linked genes in the mammary glands of Brca1ï„11/ï„11p53+/- mutant and control (p53+/-) mice at three different stages of the mammary cycle: virgin, pregnant day 16.5, and lactation day 1, using a cDNA microarray. In about 690 X-linked genes that are expresse...

ORGANISM(S): Mus musculus

2008-06-14 | E-GEOD-5861 | biostudies-arrayexpress

Correlative single-cell hard X-ray computed tomography and X-ray fluorescence imaging.

Not available

S-EPMC10917812 | biostudies-literature

Comparison of electrochemical performance of LiNi_1-x Co _x O₂ cathode materials synthesized from coated (1-x)Ni(OH)₂@xCo(OH)₂ and doped Ni_1-x Co _x (OH)₂ precursors.

Not available

S-EPMC9062005 | biostudies-literature

Escaping but not the inactive X-linked protein complex coding genes may achieve X-chromosome dosage compensation and underlie X chromosome inactivation-related diseases.

Not available

S-EPMC10336589 | biostudies-literature

Supercritical CO₂ Synthesis of Freestanding Se_1-x S _x Foamy Cathodes for High-Performance Li-Se_1-x S _x Battery.

Not available

S-EPMC8355597 | biostudies-literature

Structural basis of the farnesoid X receptor/retinoid X receptor heterodimer on inverted repeat DNA.

Not available

S-EPMC10242635 | biostudies-literature

Mass spectrometry data of the ERα-NTD samples exposed to 0-50ms x-ray beam

Here we present MS data of ERα-NTD protein samples exposed to 0-50 ms of X-ray beam at the Advanced Light Source (Berkeley, CA). Irradiated protein samples were digested with two sets of proteases, Asp-N and Lys-C, and pepsin. LC-MS/MS data was utilized to identify 16 sites of modification listed in...

ORGANISM(S): Homo sapiens (Human)

2020-05-26 | PXD011361 | Pride

siRNAs from an X-linked satellite repeat promote X-chromosome recognition in Drosophila melanogaster.

Not available

S-EPMC4246271 | biostudies-literature

X-Linked Retinoschisis: Phenotypic Variability in a Chinese Family.

Not available

S-EPMC4731765 | biostudies-literature

Automated dendritic spine detection using convolutional neural networks on maximum intensity projected microscopic volumes.

Not available

S-EPMC6402488 | biostudies-literature

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