Xie Y Y - OmicsDI

Show results for

Unknown (28488)
Proteomics (543)
Transcriptomics (117)
Genomics (64)
Metabolomics (60)
Models (1)

Organisms

Homo sapiens (362)
Mus musculus (176)
Arabidopsis thaliana (17)
Oryctolagus cuniculus (4)
Bos taurus (4)
Macaca mulatta (2)
Ovis aries (2)
Sus scrofa (2)
Larimichthys crocea (2)
Iridovirus (1)
Epinephelus coioides (1)
Plutella xylostella (1)
Rhodococcus opacus (1)
Beauveria bassiana (1)
Oryza rufipogon (1)
Sclerotinia sclerotiorum (1)
Taenia multiceps (1)
Tomato yellow leaf curl China virus (1)
Metarhizium acridum (1)
Vanderwaltozyma polyspora (1)
Naumovozyma castellii (1)
Youcai mosaic virus (1)
Capra hircus (1)
Bartonella grahamii (1)
Bemisia tabaci (1)
Mytilus edulis (1)
Dirofilaria immitis (1)
Clonorchis sinensis (1)
Oryza sativa Indica Group (1)
Bacillus subtilis (1)

Organisms

Mus musculus (1)

Repository

pride (333)
iProX (177)
biostudies-arrayexpress (133)
MetaboLights (58)
EGA (42)
MassIVE (18)
jPOST (6)
PeptideAtlas (6)
NODE (3)
GNPS (2)
PanoramaPublic (2)
ENA (2)
BioModels (1)
geo (1)
LINCS (1)
PAXDB (1)

Tissue

Cell culture (74)
Epithelial cell (31)
Liver (23)
Brain (19)
Permanent cell line cell (13)
Testis (12)
Kidney (11)
Leaf (11)
Lung (11)
Bone marrow (10)
Blood plasma (10)
Blood serum (10)
Heart (9)
Plant cell (9)
Hepatocyte (8)
Spleen (8)
Whole body (8)
Root (7)
Blood (6)
Macrophage (6)
Cell suspension culture (5)
Colon (5)
Fibroblast (5)
Skin (4)
Stem cell (4)
Blood cell (3)
Embryo (3)
Embryonic stem cell (3)
Pancreatic (2)
Others (2)

Disease

Disease free (12)
Breast cancer (9)
Hepatocellular carcinoma (5)
Brain cancer (4)
Cervix carcinoma (4)
Colon cancer (4)
Prostate adenocarcinoma (4)
Pancreatic cancer (2)
Alzheimer's disease (2)
Brain glioblastoma multiforme (2)
Cardiovascular system disease (2)
Cholangiocarcinoma (2)
Liver cancer (2)
Liver carcinoma (2)
Lung cancer (2)
Osteoporosis (2)
Primary immunodeficiency disease (2)
Rheumatoid arthritis (2)
Type 2 diabetes mellitus (2)
Wounds and Injuries (2)
Invasive carcinoma (1)
Mammary tumor (1)
VSV infection (1)
Acute kidney failure (1)
Acute leukemia (1)
Acute myeloid leukemia (1)
Amyotrophic lateral sclerosis (1)
Antenatal onset (1)
Brain ischemia (1)
Carcinoma (1)

Technology Type

Mass Spectrometry (333)
Shotgun proteomics (151)
Bottom-up proteomics (62)
Mass spectrometry (54)
Affinity purification coupled with mass spectrometry proteomics (33)
Data-dependent acquisition (29)
Gel-based experiment (22)
Data-independent acquisition (18)
Top-down proteomics (17)
SWATH MS (7)
Affinity proteomics (5)
All-ion fragmentation (5)
SRM/MRM (5)
Mass spectrometry assay (4)
MSE (3)
Proteogenomics (3)
Mass spectrometry imaging (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Fluorescence imaging (1)
Fluorescence intensity (1)
DiaPASEF (1)
Immunopeptidomics (1)
Olink affinity proteomics (1)
RNA mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (21)
Liquid Chromatography MS - positive - reverse phase (21)
Q Exactive (5)
LTQ Orbitrap Velos (5)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Orbitrap Fusion Lumos (4)
Gas Chromatography MS - positive (4)
Liquid Chromatography MS - (4)
Illumina HiSeq 2500 (3)
Illumina NovaSeq 6000 (3)
6540 Q-TOF LC/MS (Agilent) (3)
Xevo G2 QTOF (Waters) (3)
ZenoTOF 7600 (2)
Capillary electrophoresis MS - negative (2)
Capillary electrophoresis MS - positive (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
TOF Pegasus HT (LECO) (2)
BD FACSAria™ III (1)
10X Genomics Chromium Single Cell Kit (1)
10X genomics Chromium X (1)
BD FACSAriaII cell sorter (1)
Illumina HiSeq 2000 (1)
GC/MS Agilent MSD5977B (1)
6520B Q-TOF LC/MS (1)
Orbitrap Ascend (1)
Orbitrap Exploris 240 (1)
Q Exactive Plus (1)

Publication Date

2024 (115)
2025 (109)
2022 (97)
2023 (84)
2026 (52)
2021 (51)
2014 (31)
2013 (28)
2020 (23)
2019 (23)
2012 (21)
2010 (20)
2017 (17)
2015 (17)
2018 (16)
2016 (15)
2011 (8)
2009 (8)
2005 (1)
2006 (1)
2007 (1)

UNIPROT ID/AC

3MG2_ECOLI (1)
3PASE_ECOLI (1)
5FCL_ECOLI (1)
6PGD_ECOLI (1)
A2MG_ECOLI (1)
AAT_ECOLI (1)
ABGB_ECOLI (1)
ACDH_ECOLI (1)
ACKA_ECOLI (1)
ACNB_ECOLI (1)
ACPS_ECOLI (1)
ACYP_ECOLI (1)
ADIA_ECOLI (1)
AG43_ECOLI (1)
AIDB_ECOLI (1)
AK2H_ECOLI (1)
ALAA_ECOLI (1)
ALDA_ECOLI (1)
ALDB_ECOLI (1)
ALF1_ECOLI (1)
ALF_ECOLI (1)
ALLC_ECOLI (1)
ALR1_ECOLI (1)
ALR2_ECOLI (1)
ALSA_ECOLI (1)
ALSK_ECOLI (1)
AMIB_ECOLI (1)
AMPN_ECOLI (1)
AMPP_ECOLI (1)
APAG_ECOLI (1)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000170477 (2)
ENSG00000247315 (2)

CHEBI ID

CHEBI:30769 (23)
CHEBI:16704 (22)
CHEBI:17368 (22)
CHEBI:17895 (22)
CHEBI:16750 (21)
CHEBI:17295 (20)
CHEBI:48131 (20)
CHEBI:16015 (19)
CHEBI:16040 (19)
CHEBI:17154 (19)
CHEBI:17568 (19)
CHEBI:17596 (19)
CHEBI:15756 (18)
CHEBI:16235 (18)
CHEBI:16708 (18)
CHEBI:30915 (18)
CHEBI:15354 (17)
CHEBI:15971 (17)
CHEBI:16411 (17)
CHEBI:16737 (17)
CHEBI:17203 (17)
CHEBI:30805 (17)
CHEBI:55328 (17)
CHEBI:7916 (17)
CHEBI:16335 (16)
CHEBI:16467 (16)
CHEBI:16865 (16)
CHEBI:16919 (16)
CHEBI:17351 (16)
CHEBI:17509 (16)

Metabolite Name

Hypoxanthine (14)
Azelaic acid (13)
Guanine (13)
Guanosine (13)
Inosine (13)
Uracil (13)
Uridine (12)
Cytosine (11)
L-Phenylalanine (11)
Adenine (10)
Adenosine (10)
Choline (10)
Creatine (10)
Cytidine (10)
L-Arginine (10)
L-Tyrosine (10)
Pantothenic acid (10)
Citric acid (9)
Creatinine (9)
L-Proline (9)
Nicotinamide (9)
Palmitic acid (9)
Phenylacetaldehyde (9)
Proline (9)
Spermidine (9)
Suberic acid (9)
Taurine (9)
Thymidine (9)
Uric acid (9)
Asparagine (8)

First Public Date

2026 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Affiliated Eye Hospital of Shandong University of Traditional Chinese Medicine (5)
Third Military Medical University (4)
Tsinghua University, China (4)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
Shandong Normal University (3)
Zhejiang University (3)
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill,NC 27599,USA (2)
Department of Biochemistry and Molecular Biology, Capital Medical University, Beijing, 100069, China (2)
Farnusch Kaschani, Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Huazhong University of Science and Technology (2)
Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (2)
Key Laboratory for Experimental Teratology of the Ministry of Education, Advanced Medical Research Institute, Qilu Hospital, Cheeloo College of Medicine, Shandong University (2)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
Nanjing Medical University (2)
School of Laboratory Medicine and Biotechnology, Southern Medical University (2)
School of Life Sciences, Tsinghua University, China (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, China (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China ( lab head ) (2)
School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou, 510006, Guangdong, P.R. China. (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
South China Agricultural University (2)
Southwest University (2)
St Jude Children's Research Hospital (2)
St. Jude Children's Research Hospital (2)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China. (2)
State Key Laboratory of Oncology in South China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
Tianjin Medical University General Hospital (2)