Xin Yong Y - OmicsDI

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Unknown (18)
Genomics (14)
Proteomics (14)
Transcriptomics (6)
Models (2)
Metabolomics (2)

Organisms

Homo sapiens (17)
Mus musculus (10)
cellular organisms (3)
Oryza sativa (1)
Aspergillus oryzae (1)
Caenorhabditis elegans (1)
Enterobacter hormaechei (1)
Escherichia coli K-12 (1)
Oryctolagus cuniculus (1)
Plasmodium yoelii yoelii 17XNL (1)
Tetragenococcus halophilus (1)
Weissella confusa (1)
Weissella paramesenteroides (1)

Repository

iProX (13)
EGA (11)
biostudies-arrayexpress (9)
BioModels (2)
MetaboLights (2)
jPOST (1)

Technology Type

Mass spectrometry (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)

Publication Date

2025 (5)
2015 (4)
2009 (4)
2023 (4)
2024 (3)
2022 (3)
2021 (2)
2013 (1)
2026 (1)

UNIPROT ID/AC

O14543 (2)
O15524 (2)
O60674 (2)
P01112 (2)
P01579 (2)
P04049 (2)
P05231 (2)
P08887 (2)
P15260 (2)
P17676 (2)
P23458 (2)
P28482 (2)
P40189 (2)
P40763 (2)
P42224 (2)
P62136 (2)
P62993 (2)
P67775 (2)
Q02750 (2)
Q06124 (2)
Q07889 (2)

CHEBI ID

CHEBI:10043 (1)
CHEBI:10072 (1)
CHEBI:10138 (1)
CHEBI:1015 (1)
CHEBI:102130 (1)
CHEBI:102265 (1)
CHEBI:102484 (1)
CHEBI:10275 (1)
CHEBI:10319 (1)
CHEBI:10353 (1)
CHEBI:104011 (1)
CHEBI:111762 (1)
CHEBI:113 (1)
CHEBI:116931 (1)
CHEBI:125610 (1)
CHEBI:125678 (1)
CHEBI:132244 (1)
CHEBI:132506 (1)
CHEBI:132966 (1)
CHEBI:132983 (1)
CHEBI:133094 (1)
CHEBI:134622 (1)
CHEBI:135071 (1)
CHEBI:135451 (1)
CHEBI:135590 (1)
CHEBI:135849 (1)
CHEBI:136805 (1)
CHEBI:137347 (1)
CHEBI:138308 (1)
CHEBI:138746 (1)

Metabolite Name

Caffeine (2)
Tetrahydrocortisone (2)
(+/-)-c75 (1)
(+/-)12(13)-DiHOME (1)
(-)-Stercobilin (1)
(-)-camphor (1)
(-)-caryophyllene oxide (1)
(-)-trans-C75 (1)
(10S)-1alpha,19,25-trihydroxy-10,19-dihydrovitamin D3 (1)
(17alpha,23S)-17,23-Epoxy-29-hydroxy-27-norlanosta-1,8-diene-3,15,24-trione (1)
(1R,2S,3S,4R)-p-Menthane-2,3-diol (1)
(1xi,3S)-1,2,3,4-Tetrahydro-1-methyl-beta-carboline-1,3-dicarboxylic acid (1)
(20S)-1alpha,20,25-trihydroxyvitamin D3 (1)
(22R)-1alpha,22,25-trihydroxy-20-epivitamin D3 (1)
(23S,24S)-17,23-Epoxy-24,29-dihydroxy-27-norlanost-8-ene-3,15-dione (1)
(24R)-6,19-epidioxy-1alpha,24-dihydroxy-6,19-dihydrovitamin D3 (1)
(3R)-3,4-Dihydroxy-3-(hydroxymethyl)butanenitrile 4-glucoside (1)
(3beta,22R,23R,24S)-3,22,23-Trihydroxystigmastan-6-one (1)
(3beta,5alpha,6beta,22E,24R)-23-Methylergosta-7,22-diene-3,5,6-triol (1)
(9E)-9-nitrooctadecenoic Acid (1)
(9cis)-retinal (1)
(S)-10,16-Dihydroxyhexadecanoic acid (1)
-alanine (1)
-aspartylphenylalanine (1)
1,2,4-Nonadecanetriol (1)
1-(2,6,6-Trimethyl-2-cyclohexen-1-yl)-1,6-heptadien-3-one (1)
1-Cyclohexene-1-acrylic acid, 2,6,6-trimethyl-3-oxo- (1)
1-Linoleoylglycerophosphocholine (1)
1-Stearoylglycerophosphoglycerol (1)
1-Stearoylglycerophosphoinositol (1)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (4)
Methylation profiling by high throughput sequencing (2)
ChIP-chip by tiling array (1)
ChIP-seq (1)
RNA-seq of coding RNA (1)

Release Date

2015 (6)
2009 (4)
2021 (4)
2023 (3)
2013 (2)
2025 (2)
2020 (2)
2026 (1)
2024 (1)
2017 (1)
2016 (1)

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Genome-wide DNA methylation analyses by the MeDIP assay

We analyzed the genome-wide DNA methylation in Zscan4 overexpressing ES cells. Zscan4 overexpression induced slight DNA demethylation in telomere and major satellite regions. Subsequent genome-wide analysis of non-repeated regions revealed the significant reduction of DNA methylation at Zscan4-depen...

ORGANISM(S): Mus musculus

2015-09-10 | E-GEOD-58618 | biostudies-arrayexpress

Isolation and characterization of WUPyV in polarized human airway epithelial cells.

Not available

S-EPMC7344044 | biostudies-literature

Whole genome sequencing and evolution analyses of Human metapneumovirus.

Not available

S-EPMC10164418 | biostudies-literature

Randomized phase III trial of induction chemotherapy with docetaxel, cisplatin, and fluorouracil followed by surgery versus up-front surgery in locally advanced resectable oral squamous cell carcinoma.

Not available

S-EPMC5569675 | biostudies-literature

miRNA-30 family inhibition protects against cardiac ischemic injury by regulating cystathionine-γ-lyase expression.

Not available

S-EPMC4283074 | biostudies-literature

Co-Designing Remote Patient Monitoring Technologies for Inpatients: Systematic Review.

Not available

S-EPMC11522647 | biostudies-literature

What Factors Are Most Closely Associated With Mood Disorders in Adolescents During the COVID-19 Pandemic? A Cross-Sectional Study Based on 1,771 Adolescents in Shandong Province, China.

Not available

S-EPMC8481827 | biostudies-literature

Bispecific T cell engagers and their synergistic tumor immunotherapy with oncolytic viruses.

Not available

S-EPMC8263669 | biostudies-literature

A Cyclic di-GMP-binding Adaptor Protein Interacts with Histidine Kinase to Regulate Two-component Signaling.

Not available

S-EPMC4965561 | biostudies-literature

Qi2013 - IL-6 and IFN crosstalk model

Qi2013 - IL-6 and IFN crosstalk model This model [BIOMD0000000544] describes the crosstalk between IFN-gamma and IL-6 induced signalling; it aims to outline mechanisms and factors that may control the interaction between both signalling pathways, discussing a role of heterodimer formation in signa...

2024-09-02 | BIOMD0000000544 | BioModels

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