Xu F F - OmicsDI

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Unknown (27799)
Proteomics (633)
Transcriptomics (276)
Genomics (130)
Metabolomics (108)
Multiomics (6)
Other (1)

Organisms

Homo sapiens (335)
Mus musculus (142)
Arabidopsis thaliana (17)
Rattus norvegicus (10)
Saccharomyces cerevisiae (10)
Drosophila melanogaster (7)
Zea mays (4)
Gallus gallus (4)
Triticum aestivum (4)
Mustela putorius furo (3)
Oryza sativa (3)
Oryza sativa Japonica Group (3)
Candida albicans (3)
Danio rerio (3)
Agrobacterium tumefaciens (2)
Bemisia tabaci (2)
Glycine max (2)
Coryphaena hippurus (1)
Capsicum annuum var. glabriusculum (1)
Pseudomonas aeruginosa M18 (1)
Nannochloropsis oceanica (1)
Rhodococcus opacus (1)
Brassica oleracea (1)
Solanum pimpinellifolium (1)
Pyropia yezoensis (1)
Metarhizium anisopliae (1)
Citrullus lanatus (1)
Citrus reticulata (1)
Brassica rapa subsp. pekinensis (1)
Synechocystis sp. PCC 6803 (1)

Organisms

Saccharomyces cerevisiae (1)
Caenorhabditis elegans (1)
Mus musculus (1)

Repository

pride (359)
biostudies-arrayexpress (320)
iProX (205)
MetaboLights (104)
EGA (79)
MassIVE (45)
PeptideAtlas (16)
jPOST (5)
GNPS (4)
ENA (4)
geo (3)
PanoramaPublic (2)
GPMDB (1)
PAXDB (1)

Tissue

Cell culture (97)
Epithelial cell (33)
Brain (19)
Liver (19)
Permanent cell line cell (13)
Plasma Non-glyco (11)
Plant cell (10)
Whole body (10)
Bone marrow (9)
Heart (9)
Macrophage (9)
Testis (9)
B cell (8)
Hepatocyte (8)
Blood plasma (7)
Leaf (7)
Blood (6)
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Shoot (6)
T cell (6)
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Embryo (4)
Embryonic stem cell (4)
Others (3)
Male Reproductive System (2)

Disease

Breast cancer (14)
Disease free (12)
Colon cancer (9)
Acute leukemia (8)
Brain cancer (4)
Type 2 diabetes mellitus (4)
Alzheimer's disease (3)
Hepatocellular carcinoma (3)
Malignant neoplasm of ovary (3)
Osteosarcoma (3)
Autism spectrum disorder (2)
Cardiovascular system disease (2)
Cervix carcinoma (2)
Diabetes mellitus (2)
Gastric adenocarcinoma (2)
Liver cancer (2)
Lung cancer (2)
Lymphoma (2)
Respiratory syncytial virus infection (1)
Not Available (1)
2-aminoadipic 2-oxoadipic aciduria (1)
Adenocarcinoma (1)
Alzheimer's disease 1 (1)
Aortic dissection (1)
Arthritis (1)
Bladder transitional cell carcinoma (1)
Brain glioblastoma multiforme (1)
Burkitt lymphoma (1)
Chronic myeloid leukemia (1)
Endometrial Endometrioid Adenocarcinoma (1)

Technology Type

Mass Spectrometry (359)
Shotgun proteomics (185)
Mass spectrometry (84)
Bottom-up proteomics (47)
Affinity purification coupled with mass spectrometry proteomics (43)
Gel-based experiment (39)
Data-dependent acquisition (31)
Mass spectrometry assay (17)
Data-independent acquisition (13)
Top-down proteomics (12)
SWATH MS (11)
NMR spectroscopy (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
SRM/MRM (4)
Affinity proteomics (3)
RNA mass spectrometry (3)
Illumina HiSeq 2000 (2)
Mass spectrometry imaging (2)
Olink affinity proteomics (2)
Affymetrix/Illumina (1)
Complete Genomics (COMPLETE_GENOMICS) (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
All-ion fragmentation (1)
DiaPASEF (1)
MSE (1)
Metaproteomics (1)

Instrument Platform

LTQ Orbitrap Velos (16)
Q Exactive HF (7)
Q Exactive (6)
Orbitrap Fusion Lumos (6)
Illumina NovaSeq 6000 (4)
MS:1000031 (4)
TSQ Quantiva (4)
Q Exactive Plus (3)
LTQ Orbitrap (3)
Orbitrap Fusion (3)
LTQ Orbitrap Elite (3)
BGISEQ-500 (2)
HiSeq X Ten (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
TripleTOF 6600 (2)
LTQ (2)
Orbitrap Exploris 480 (2)
Q Exactive HF-X (2)
TimsTOF Pro (2)
Hamamatsu Nanozoomer S60 (1)
NextSeq 2000 (1)
Illumina HiSeq 4000 (1)
TSQ Quantum Ultra (1)
Instrument (1)
6495C Triple Quadrupole LC/MS (1)
Exactive Plus (1)
LTQ Orbitrap Velos Pro (1)
LTQ XL (1)

Publication Date

2022 (116)
2023 (101)
2025 (96)
2024 (89)
2021 (75)
2020 (71)
2015 (65)
2026 (63)
2014 (60)
2019 (56)
2013 (55)
2016 (43)
2012 (37)
2010 (32)
2018 (31)
2011 (24)
2017 (22)
2009 (11)
2008 (10)
2007 (5)
2006 (1)

UNIPROT ID/AC

89462.XP_006039585.1 (1)
89462.XP_006039600.1 (1)
89462.XP_006039626.1 (1)
89462.XP_006039630.1 (1)
89462.XP_006039638.1 (1)
89462.XP_006039640.1 (1)
89462.XP_006039668.1 (1)
89462.XP_006039674.1 (1)
89462.XP_006039692.1 (1)
89462.XP_006039695.1 (1)
89462.XP_006039696.1 (1)
89462.XP_006039697.1 (1)
89462.XP_006039706.1 (1)
89462.XP_006039712.1 (1)
89462.XP_006039721.1 (1)
89462.XP_006039726.1 (1)
89462.XP_006039730.1 (1)
89462.XP_006039752.1 (1)
89462.XP_006039756.1 (1)
89462.XP_006039757.1 (1)
89462.XP_006039762.1 (1)
89462.XP_006039763.1 (1)
89462.XP_006039783.1 (1)
89462.XP_006039794.1 (1)
89462.XP_006039815.1 (1)
89462.XP_006039816.1 (1)
89462.XP_006039820.1 (1)
89462.XP_006039846.1 (1)
89462.XP_006039847.1 (1)
89462.XP_006039864.1 (1)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (8)
ENSG00000247315 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:16704 (34)
CHEBI:16919 (31)
CHEBI:30769 (30)
CHEBI:17368 (28)
CHEBI:16708 (27)
CHEBI:17568 (27)
CHEBI:7916 (27)
CHEBI:17596 (27)
CHEBI:15891 (26)
CHEBI:32816 (26)
CHEBI:27897 (26)
CHEBI:15756 (26)
CHEBI:17351 (25)
CHEBI:28044 (24)
CHEBI:55328 (24)
CHEBI:6650 (24)
CHEBI:16335 (24)
CHEBI:15354 (24)
CHEBI:28300 (23)
CHEBI:16750 (23)
CHEBI:16027 (23)
CHEBI:16737 (23)
CHEBI:17895 (23)
CHEBI:17295 (23)
CHEBI:16811 (22)
CHEBI:18183 (22)
CHEBI:18237 (22)
CHEBI:17509 (22)
CHEBI:16467 (22)
CHEBI:30915 (22)

Metabolite Name

Uridine (26)
Creatine (25)
Uracil (24)
Taurine (22)
Inosine (22)
Hypoxanthine (21)
Adenine (20)
Adenosine (19)
L-Arginine (18)
Citric acid (17)
L-Tryptophan (17)
Azelaic acid (17)
Guanosine (17)
L-Tyrosine (17)
Taurocholic acid (16)
Creatinine (16)
L-Histidine (15)
Choline (15)
Xanthosine (15)
Guanine (15)
Xanthine (15)
Betaine (14)
Pantothenic acid (14)
Cytosine (14)
Uric acid (14)
Cytidine (14)
Thymidine (14)
L-Valine (14)
L-Phenylalanine (14)
Glycine (13)

First Public Date

2023 (1)
2017 (1)
2014 (1)
2013 (1)

Modification

Not available (2)
15.994915 (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
6-dioxaoctanediamine derivatized cysteine (1)

Study type

Transcription profiling by array (139)
RNA-seq of coding RNA (73)
ChIP-seq (31)
Methylation profiling by high throughput sequencing (15)
Comparative genomic hybridization by array (13)
ChIP-chip by tiling array (9)
Methylation profiling by array (7)
RNA-seq of non coding RNA (6)
Other (5)
RNA-seq of coding RNA from single cells (4)
Transcription profiling by tiling array (3)
Genotyping by array (3)
Unknown experiment type (2)
Cell line - One-color microarray (2)
Transcription profiling by RT-PCR (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
MeDIP-seq (1)
ChIP-chip by array (1)
Single nucleus RNA sequencing (1)

Release Date

2025 (4141)
2022 (3786)
2023 (3446)
2024 (3340)
2021 (2892)
2020 (2177)
2019 (1500)
2018 (1314)
2017 (1106)
2016 (971)
2015 (834)
2014 (582)
2026 (524)
2013 (398)
2012 (335)
2011 (263)
2010 (176)
2009 (129)
2008 (84)
2007 (33)
2006 (29)
2005 (26)
2004 (8)
2003 (7)
2001 (6)
2002 (4)
2000 (3)
1999 (3)
1998 (1)
1997 (1)

Lab affiliation

Center of Molecular and Cellular Oncology, Yale University (4)
BGI Research (3)
Beijing proteome research center (3)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
Tongji University (3)
Central South University (2)
College of Horticulture, Northwest A&F University (2)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (2)
Department of Pharmaceutical Sciences, Leslie Dan Faculty of Pharmacy, University of Toronto (2)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Faculty of Health Sciences, University of Macau, Macau, China (2)
Georgia Institute of Technology (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (2)
Institute of Medical Biology, Chinese Academy of Medical Science and Peking Union Medical School, Kunming, China. (2)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (2)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences (2)
Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
Rutgers University-Newark, Chemistry Department (2)
SJTU (2)
School of Chemistry and Biochemistry and the Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia 30332, USA (2)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
State Key Laboratory of NBC Protection for Civilian (2)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Engineering Research Center for Protein Drugs, National Center for Protein Sciences, Beijing Institute of Radiation Medicine, Beijing 102206, China (2)

Tags

xref:PubMed:22561152 (1)
xref:PubMed:19169244 (1)
xref:PubMed:24532782 (1)

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Fusarium oxysporum f. sp. niveum induced by myriocin produced by Bacillus amyloliquefaciens LZN01

ORGANISM(S): Fusarium Oxysporum F. Sp. Niveum

2020-07-03 | PXD020176 |

Comparative O-glycoproteomics of Fusarium oxysporum

Fusarium oxysporum causes Fusarium wilt syndrome in more than 120 different plant hosts, including globally important crops such as tomato, cotton, banana, melon, etc. F. oxysporum shows high host specificity in over 150 formae speciales and have been ranked in the top 10 plant fungal pathogens. Alt...

ORGANISM(S): Fusarium oxysporum f. cucumerinum

2019-10-28 | PXD012530 | Pride

Transcriptional profiling of microdissected ventromedial hypothalamus in Nkx2-1 f/f vs. Nkx2-1 f/f; Sf1Cre female mice

Microdissected ventromedial hypothalamus (VMH) was profiled to identify transcriptional changes after Nkx2-1 ablation in female mice. Total RNA was extracted from conditional mutants (Nkx2-1 f/f; Sf1Cre) and floxed controls (Nkx2-1 f/f) at postnatal day 10 (P10) and profiled using Mouse ref8 v2.0 Il...

ORGANISM(S): Mus musculus

2014-11-27 | E-GEOD-63656 | biostudies-arrayexpress

Enhancing MAD F(A) data for substructure determination.

Not available

S-EPMC2917277 | biostudies-literature

Cardiac toxicity of Triptergium wilfordii Hook F. may correlate with its inhibition to hERG channel.

Not available

S-EPMC6812191 | biostudies-literature

Identification of the cellular component interacted with F. nucleatum.

We incubated F. nucleatum lysates with biotinylated proteins from KRAS p.G12D, KRAS p.G13D and KRAS WT cells respectively. Subsequent western blot analysis showed that three candidate proteins from F. nucleatum might interact with KRAS p.G12D cells. The bands of interest were then submitted for mass...

ORGANISM(S): Fusobacterium nucleatum CTI-1

2024-01-25 | PXD048686 | Pride

Kras g12d fn1859

Arabidopsis F-box proteins D5BF1 and D5BF2 negatively regulate Agrobacterium-mediated transformation and tumorigenesis.

Not available

S-EPMC11393451 | biostudies-literature

Molecular characterization of a Fus3/Kss1 type MAPK from Puccinia striiformis f. sp. tritici, PsMAPK1.

Not available

S-EPMC3136484 | biostudies-literature

Isolation, Purification and Quantification of Ginsenoside F₅ and F₃ Isomeric Compounds from Crude Extracts of Flower Buds of Panax ginseng.

Not available

S-EPMC6273083 | biostudies-literature