Xu Li L - OmicsDI

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Unknown (26539)
Proteomics (571)
Transcriptomics (293)
Metabolomics (107)
Genomics (68)
Models (3)
Multiomics (3)
Genomic (1)
Other (1)

Organisms

Homo sapiens (337)
Mus musculus (146)
Arabidopsis thaliana (16)
Rattus norvegicus (14)
Oryza sativa (13)
Gallus gallus (7)
Zea mays (6)
Drosophila melanogaster (5)
Glycine max (4)
Oryza sativa Indica Group (3)
Citrus sinensis (3)
Ovis aries (3)
Caenorhabditis elegans (3)
Ichthyophthirius multifiliis (2)
Gossypium hirsutum (2)
Actinobacillus pleuropneumoniae (2)
Schizosaccharomyces pombe (2)
Sus scrofa (2)
Sphingomonas sp. ATCC 31555 (1)
Actinobacillus pleuropneumoniae serovar 3 str. JL03 (1)
Salvia miltiorrhiza (1)
Penicillium oxalicum (1)
Agrobacterium tumefaciens (1)
Phyllostachys edulis (1)
Oreochromis niloticus (1)
Camellia sinensis (1)
Nannochloropsis oceanica (1)
Rhodococcus opacus (1)
Chromolaena odorata (1)
Hevea brasiliensis (1)

Organisms

gut metagenome (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (335)
iProX (285)
pride (227)
MetaboLights (104)
MassIVE (38)
EGA (23)
PeptideAtlas (16)
BioModels (3)
GNPS (3)
PAXDB (3)
ENA (3)
dbGaP (1)
GPMDB (1)
jPOST (1)
PanoramaPublic (1)

Tissue

Cell culture (46)
Liver (23)
Epithelial cell (15)
Brain (12)
Plasma Non-glyco (11)
Hepatocyte (10)
Permanent cell line cell (9)
Blood plasma (8)
Whole body (8)
Lung (7)
Testis (7)
Heart (5)
Retina (5)
T cell (5)
B cell (4)
Blood cell (4)
Blood serum (4)
Bone marrow (4)
Kidney (4)
Leaf (4)
Root (4)
Seedling (4)
Skin (4)
Others (3)
Blood (3)
Colon (3)
Pancreas (3)
Urine (3)
Male Reproductive System (2)
Byssus (2)

Disease

Breast cancer (8)
Disease free (6)
Hepatocellular carcinoma (4)
Liver cancer (4)
Non-alcoholic steatohepatitis (3)
Cardiovascular system disease (2)
Colon cancer (2)
Lung adenocarcinoma (2)
Malignant neoplasm of ovary (2)
Skin melanoma (2)
Stomach cancer (2)
Not Available (1)
Acute leukemia (1)
Acute pancreatitis (1)
Alzheimer's disease (1)
Cholangiocarcinoma (1)
Endocervical adenocarcinoma (1)
Gastric adenocarcinoma (1)
Lung cancer (1)
Lung small cell carcinoma (1)
Lymphoma (1)
Myopia (1)
Pancreatitis (1)
Prostate cancer (1)
Retinal disease (1)
Severe acute respiratory syndrome (1)
Stomach carcinoma (1)
Type 2 diabetes mellitus (1)
Vascular dementia (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (227)
Shotgun proteomics (126)
Mass spectrometry (87)
Bottom-up proteomics (26)
Affinity purification coupled with mass spectrometry proteomics (23)
Gel-based experiment (20)
Mass spectrometry assay (16)
Data-dependent acquisition (16)
Top-down proteomics (9)
Data-independent acquisition (8)
SWATH MS (6)
Mass spectrometry imaging (4)
SRM/MRM (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Affymetrix/Illumina (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)
RNA mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (51)
Liquid Chromatography MS - negative - reverse phase (47)
LTQ Orbitrap Velos (15)
Q Exactive HF (10)
Q Exactive (8)
Illumina HiSeq 2000 (5)
Q Exactive HF-X (5)
Illumina NovaSeq 6000 (4)
Orbitrap Fusion Lumos (4)
Q Exactive Plus (4)
TripleTOF 6600 (2)
TimsTOF Pro (2)
Cell Ranger (1)
Computational analysis using R (Seurat v5.0.0) (1)
Not applicable (1)
Illumina iScan system (1)
QIAsymphony SP (1)
Illumina Genome Analyzer IIx (1)
10x Genomics Chromium Controller (1)
Illumina HiSeq 1000 (1)
BGISEQ-500 (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Instrument (1)
Exactive Plus (1)
LTQ Orbitrap (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)

Publication Date

2022 (108)
2021 (82)
2023 (75)
2015 (74)
2025 (74)
2014 (67)
2013 (55)
2024 (48)
2016 (47)
2019 (44)
2020 (43)
2012 (34)
2010 (34)
2026 (33)
2011 (25)
2018 (21)
2017 (18)
2008 (9)
2009 (8)
2007 (5)
2005 (4)
2006 (1)

UNIPROT ID/AC

128UP_DROME (1)
140U_DROME (1)
14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
1433E_DROME (1)
1433Z_DROME (1)
18C_DROME (1)
2AAA_DROME (1)
2ABA_DROME (1)
3BHS1_MACMU (1)
3HIDH_DROME (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (8)
ENSG00000247315 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:16704 (30)
CHEBI:17368 (30)
CHEBI:16708 (27)
CHEBI:17596 (27)
CHEBI:16750 (26)
CHEBI:17568 (26)
CHEBI:30769 (26)
CHEBI:7916 (25)
CHEBI:16919 (25)
CHEBI:15354 (25)
CHEBI:17154 (24)
CHEBI:15891 (24)
CHEBI:16027 (24)
CHEBI:6650 (23)
CHEBI:30915 (23)
CHEBI:17895 (23)
CHEBI:16335 (22)
CHEBI:17509 (22)
CHEBI:27897 (22)
CHEBI:16811 (21)
CHEBI:16235 (21)
CHEBI:55328 (21)
CHEBI:17295 (21)
CHEBI:28865 (21)
CHEBI:17351 (21)
CHEBI:16610 (20)
CHEBI:17750 (20)
CHEBI:16359 (20)
CHEBI:24813 (20)
CHEBI:17405 (20)

Metabolite Name

Taurine (21)
Uridine (21)
Creatine (20)
Hypoxanthine (20)
Uracil (19)
L-Histidine (18)
Adenosine (18)
Inosine (18)
Adenine (17)
Taurocholic acid (16)
Guanine (16)
Xanthine (16)
Creatinine (16)
L-Tyrosine (16)
L-Phenylalanine (16)
Choline (15)
L-Tryptophan (15)
4-Pyridoxic acid (14)
Indole (14)
Riboflavin (14)
Guanosine (14)
Kynurenic acid (13)
L-Arginine (13)
Pantothenic acid (13)
Spermidine (13)
Cytosine (13)
Uric acid (13)
Thymidine (13)
L-Valine (13)
Betaine (12)

First Public Date

2025 (2)
2018 (1)

Modelling Approach

Ordinary differential equation model (3)

Lab affiliation

Affiliated Eye Hospital of Shandong University of Traditional Chinese Medicine (5)
Experimental Radiation Oncology, MD Anderson Cancer Center, Houston, TX, USA (3)
Northwest University (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China. (3)
Stowers Institute for Medical Research (3)
University of Ottawa (3)
Zhejiang University (3)
BMI, Faculty of Medicine, University of Ottawa, Canada (2)
Beijing proteome research center (2)
Central South University (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
Department of Cardiology, Renmin Hospital of Wuhan University, Wuhan 430060, China (2)
Department of Hepatobiliary Surgery, Nanfang Hospital, Southern Medical University, Guangzhou, China (2)
Fudan University (2)
Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore (2)
Regulatory research division, Health Canada (2)
SJTU (2)
Soochow University (2)
westlake.edu.cn (2)
1 Department of Emergency, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (1)
Anhui Medical University (1)
BGI-shenzhen (1)
Basic Medicine, Guangxi University of Chinese Medicine, Nanning, China (1)
Beijing Key Laboratory for Radiobiology, Beijing Institute of Radiation Medicine, Beijing 100850, P.R. China (1)
Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， Beijing 102206 P.R. China. (1)
Beijing proteome research center, Beijing, China (1)
Bio-X Institutes, Key Laboratory for the Genetics of Development and Neuropsychiatric Disorders (Ministry of Education), Shanghai Key Laboratory of Psychotic Disorders, and Brain Science and Technology Research Center, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China. (1)
Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA (1)
Carnegie Institution at Stanford (1)

IsPrivate

False (3)

Modification

15.994915 (2)
57.021464 (2)
71.037114 (2)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (140)
RNA-seq of coding RNA (89)
ChIP-seq (28)
RNA-seq of non coding RNA (16)
Methylation profiling by high throughput sequencing (14)
ChIP-chip by tiling array (13)
Comparative genomic hybridization by array (10)
Unknown experiment type (4)
Methylation profiling by array (4)
Transcription profiling by RT-PCR (3)
Other (3)
RNA-seq of coding RNA from single cells (3)
Genotyping by array (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by high throughput sequencing (1)

Release Date

2025 (4166)
2022 (3828)
2023 (3367)
2024 (3337)
2021 (2874)
2020 (2110)
2019 (1429)
2018 (1211)
2017 (985)
2016 (819)
2015 (695)
2026 (579)
2014 (521)
2013 (315)
2012 (221)
2011 (139)
2010 (103)
2009 (72)
2008 (47)
2007 (18)
2006 (16)
2005 (9)
2004 (8)
2002 (3)
2003 (2)

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Methionine Intervention Induces PD-L1 Expression to Enhance the Immune Checkpoint Therapy Response in MTAP-deleted Osteosarcoma

Osteosarcoma (OS), a malignant bone tumor with limited treatment options, exhibits low sensitivity to immune checkpoint therapy (ICT). Through genomics and transcriptomics analyses, we have identified a subgroup of OS with methylthioadenosine phosphorylase (MTAP) deletion, which contributes to ICT r...

2026-06-09 | MTBLS11985 | MetaboLights

SAGE of cotton fibers and ovules.

Transcriptomes fiber and ovules were compared by applying serial analysis of gene expression (SAGE). Keywords: Tissue Comparison We constructed three SAGE libraries and sequenced 57321, 64188, and 69104 tags from fiber, Xu-142 ovule (ovule) and fl mutant ovules (fl) respectively of Upland Cotton, G...

ORGANISM(S): Gossypium hirsutum

2007-02-17 | E-GEOD-6103 | biostudies-arrayexpress

Based on the Metabolomic Approach the Energy Metabolism Responses of Oriental River Prawn Macrobrachium nipponense Hepatopancreas to Acute Hypoxia and Reoxygenation

Hypoxia represents a major physiological challenge for prawns and is a problem in aquaculture. Therefore, an understanding of the metabolic response mechanism of economically important prawn species to hypoxia and re-oxygenation is essential. However, little is known about the intrinsic mechanisms b...

2021-05-17 | MTBLS584 | MetaboLights

Description of Alvaniawangi Xu, Qi & Kong, sp. nov. (Mollusca, Gastropoda, Littorinimorpha, Rissoidae) from the East China Sea.

Not available

S-EPMC10426732 | biostudies-literature

Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

A novel Saclayvirus Acinetobacter baumannii phage genomic analysis and effectiveness in preventing pneumonia.

Not available

S-EPMC11283397 | biostudies-literature

OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.

Not available

S-EPMC9120446 | biostudies-literature

Effects of Compound Probiotics on Cecal Microbiota and Metabolome of Swine.

Not available

S-EPMC10044668 | biostudies-literature

Mechanistic study on the side arm effect in a palladium/Xu-Phos-catalyzed enantioselective alkoxyalkenylation of γ-hydroxyalkenes.

Not available