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ProteomicsB. abortus 104M LC-MS/MS - A comprehensive proteogenomic study of the human Brucella vaccine strain 104 M
In the present study, we performed subcellular fractionation prior to protein extraction to reduce interference. Whole cell protein and membrane protein extracts were prepared for strain 104M. Peptide fractionation prior to analysis is an alternative method that achieves higher proteome coverage. Co...
ORGANISM(S): Brucella abortus 104M 
2017-05-29 | PXD005403 | Pride
B. abortus 104m Lc-ms/ms 
ProteomicsChinese yew seed dormancy and germination
This project try to provide Chinese yew dormant and germinating seed proteome
ORGANISM(S): Taxus Mairei 
2023-06-02 | PXD042641 |
TranscriptomicsGlobal transcriptomic changes induced by manipulate MSH1 gene in tomato using next generation sequencing
apical meristem tissues from 4-week-old wild type, epiF3, MSH1 gene mutant including (mild-DR and dwarf-DR) plants were used in this experiment. For each genotype, the transcriptome was sequenced with 3 biological replicates.
ORGANISM(S): Solanum lycopersicum 
2015-02-23 | E-GEOD-65242 | biostudies-arrayexpress
ProteomicsPinctada fucata martensii shell matrix protein LC-MSMS
Nacre, the iridescent material found in pearls and shells of molluscs, is formed through an extraordinary process of matrix-assisted biomineralization. Despite recent advances, many parts of the biomineralization process and its evolutionary origin remain a mystery. The pearl oyster Pinctada fucata ...
ORGANISM(S): Bivalvia 
2017-07-07 | PXD006786 | Pride
Lc-msms Shell matrix protein Pearl oyster 
UnknownTaeniid cestodes in Tibetan foxes (Vulpes Ferrilata) detected by copro-PCR: Applications and challenges.
Not available
S-EPMC7369422 | biostudies-literature
TranscriptomicsRNA-seq of Pacific oyster Crassostrea gigas under different developmental stages and stress treatments
Deep sequencing of samples from different development stages, different adult organs and different stress treatments of Pacific oyster Crassostrea gigas Samples of 38 developmental stages from egg to juvenile were analyzed using single-end 49 bp RNA-seq. Two libraries mixed by RNAs from different de...
ORGANISM(S): Crassostrea gigas 
2012-09-13 | E-GEOD-31012 | biostudies-arrayexpress
UnknownInsights from multi-omics integration into seed germination of Taxus chinensis var mairei.
Not available
S-EPMC10495361 | biostudies-literature
TranscriptomicsAuxin-independent NAC pathway regulates cell wall metabolism in response to explant-specific wounding during regeneration in Arabidopsis II
In this study, through a genome-wide transcriptome analysis of wounding in the leaf explant, we identified NAC1 (petunia NAM and Arabidopsis ATAF1, ATAF2, and CUC2) family transcription factor gene that acts in response to wounding and functions in regulation of cell wall metabolism. RNA-Seq analys...
ORGANISM(S): Arabidopsis thaliana 
2015-12-31 | E-GEOD-74585 | biostudies-arrayexpress
TranscriptomicsAuxin-independent NAC pathway regulates cell wall metabolism in response to explant-specific wounding during regeneration in Arabidopsis I
In this study, through a genome-wide transcriptome analysis of wounding in the leaf explant, we identified NAC1 (petunia NAM and Arabidopsis ATAF1, ATAF2, and CUC2) family transcription factor gene that acts in response to wounding and functions in regulation of cell wall metabolism. RNA-Seq analys...
ORGANISM(S): Arabidopsis thaliana 
2015-12-31 | E-GEOD-74584 | biostudies-arrayexpress
MetabolomicsVGLL4 modulates Paneth cells and sustains intestinal homeostasis.
Paneth cells are defensive cells in the intestinal tract, which secrete niche factors and antimicrobial peptides (AMPs) to maintain the small intestinal stem cell niche and immune homeostasis. Here, we show that Vestigial-like family member 4 (VGLL4) plays a pivotal role in maintaining small intesti...
2026-03-12 | MTBLS10456 | MetaboLights
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