Xu Yu Y - OmicsDI

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Unknown (9856)
Proteomics (315)
Metabolomics (37)
Transcriptomics (35)
Genomics (22)
Multiomics (6)

Organisms

Homo sapiens (147)
Mus musculus (34)
Drosophila melanogaster (4)
Oryctolagus cuniculus (4)
Rattus norvegicus (3)
Arabidopsis thaliana (3)
Oryza sativa Japonica Group (2)
Anser cygnoides (2)
Mycolicibacterium smegmatis MC2 51 (2)
Mycolicibacterium smegmatis MC2 155 (2)
Macaca fascicularis fascicularis (2)
Rattus rattus (2)
Rhodococcus opacus (1)
Brassica oleracea (1)
Siniperca chuatsi (1)
Clonorchis sinensis (1)
Citrus sinensis (1)
Oryza sativa (1)
Saccharomyces cerevisiae (1)
Anser cygnoides orientalis (1)
12461 (1)
Vibrio cholerae (1)
Vibrio cholerae H1 (1)
Zostera marina (1)
Pyricularia oryzae (1)
Cardamine circaeoides (1)
Saccharina japonica (1)
Escherichia coli RS218 (1)
Spodoptera frugiperda (1)
Carassius gibelio (1)

Organisms

Mus musculus (1)

Repository

iProX (167)
pride (137)
biostudies-arrayexpress (39)
MetaboLights (35)
EGA (17)
MassIVE (7)
PeptideAtlas (3)
GNPS (2)
jPOST (1)
ENA (1)

Tissue

Cell culture (40)
Epithelial cell (10)
Whole body (6)
Leaf (6)
Kidney (6)
Plant cell (5)
Liver (5)
Blood cell (5)
Heart (4)
Cell suspension culture (4)
Lung (4)
Permanent cell line cell (4)
Others (3)
Shoot (3)
Macrophage (3)
Stem cell (3)
HeLa cell (3)
Testis (3)
Hepatocyte (3)
B cell (3)
T cell (3)
Byssus (2)
Gastric adenocarcinoma cell (2)
Flower (2)
Blood platelet (2)
Urine (2)
Lymph node (2)
Oocyte (2)
Blood serum (2)
Brain (2)

Disease

Breast cancer (8)
Acute leukemia (5)
Disease free (4)
Cervix carcinoma (3)
Colon cancer (3)
Pulmonary neuroendocrine tumor (2)
Prostate adenocarcinoma (2)
Brain cancer (2)
Renal cell carcinoma (2)
Malignant neoplasm of ovary (2)
VSV infection (1)
Pulmonary alveolar microlithiasis (1)
Neuropathic pain (1)
Lung mixed small cell and squamous cell carcinoma (1)
Diarrhea (1)
Vascular dementia (1)
Skin amelanotic melanoma (1)
Diffuse large B-cell lymphoma (1)
Nephrolithiasis (1)
Skin melanoma (1)
Gastric adenocarcinoma (1)
Prostate cancer (1)
Lymphoma (1)
Lung cancer (1)
Cardiovascular system disease (1)
Kidney cancer (1)

Technology Type

Mass Spectrometry (137)
Shotgun proteomics (70)
Mass spectrometry (28)
Bottom-up proteomics (21)
Gel-based experiment (15)
Affinity purification coupled with mass spectrometry proteomics (11)
Data-dependent acquisition (9)
SWATH MS (7)
Top-down proteomics (7)
Mass spectrometry assay (5)
Data-independent acquisition (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Mass spectrometry imaging (1)
Affinity proteomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (19)
Liquid Chromatography MS - negative - reverse phase (15)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (4)
MS:1000031 (3)
LTQ Orbitrap Velos Pro (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
6540 Q-TOF LC/MS (Agilent) (2)
Nuclear Magnetic Resonance (NMR) - (2)
LTQ Orbitrap Elite (2)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2000 (1)
TripleTOF 5600 (1)
Q Exactive (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating – hilic (1)
6530 Q-TOF LC/MS (Agilent) (1)
Direct infusion MS - negative (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
QExactive (1)

Publication Date

2022 (54)
2025 (40)
2023 (35)
2021 (32)
2024 (31)
2026 (27)
2020 (23)
2014 (18)
2019 (18)
2016 (12)
2013 (7)
2018 (7)
2017 (5)
2015 (3)
2012 (3)
2009 (3)
2011 (2)
2010 (1)
2008 (1)
2005 (1)

UNIPROT ID/AC

Q6ZVE7 (3)
Q99619 (3)
Q8N4U5 (3)
Q9UBZ4 (3)
Q96QP1 (3)
Q9Y576 (3)
Q6ZTQ3 (3)
Q9H633 (3)
Q96PC5-2 (3)
Q96PC5 (3)
Q8TDW5 (3)
Q9NXZ2 (3)
Q8IZP6 (3)
Q9UHA2 (3)
Q6MZQ0 (3)
Q9C019 (3)
Q96EP1 (3)
Q8IYM2 (3)
Q86SJ2 (3)
Q02833 (3)
O43194 (3)
Q9Y2C3 (3)
O00338 (3)
Q6NSJ2 (3)
Q17R98 (3)
Q9Y664 (3)
Q9UNP4 (3)
Q96BZ9 (3)
Q8WUA8 (3)
Q3MII6 (3)

ENSEMBL ID

ENSG00000247315 (3)
ENSG00000147251 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:16704 (13)
CHEBI:17154 (12)
CHEBI:17596 (11)
CHEBI:16919 (10)
CHEBI:27897 (10)
CHEBI:15354 (10)
CHEBI:17895 (10)
CHEBI:17351 (10)
CHEBI:17368 (10)
CHEBI:30769 (10)
CHEBI:18132 (9)
CHEBI:16811 (9)
CHEBI:28875 (9)
CHEBI:28044 (9)
CHEBI:16335 (9)
CHEBI:17568 (9)
CHEBI:15355 (9)
CHEBI:17509 (9)
CHEBI:15891 (9)
CHEBI:55328 (9)
CHEBI:17405 (9)
CHEBI:16027 (9)
CHEBI:16347 (9)
CHEBI:18186 (8)
CHEBI:28300 (8)
CHEBI:17533 (8)
CHEBI:64489 (8)
CHEBI:16750 (8)
CHEBI:15824 (8)
CHEBI:15741 (8)

Metabolite Name

Creatine (11)
Uridine (10)
Inosine (9)
Uracil (8)
Acetylcholine (8)
Taurine (8)
Betaine (7)
Adenosine (7)
Urocanic acid (7)
Cytosine (7)
L-Carnitine (7)
L-Tyrosine (7)
Hypoxanthine (7)
Genistein (6)
L-Proline (6)
L-Arginine (6)
L-Histidine (6)
Nicotinamide (6)
Indole (6)
Choline (6)
Taurocholic acid (6)
Guanine (6)
Isoleucine (6)
Thymidine (6)
Creatinine (6)
Glycerophosphocholine (6)
Leucine (5)
Naringenin (5)
Sphingosine (5)
Niacinamide (5)

First Public Date

2018 (1)

Study type

RNA-seq of coding RNA (15)
Transcription profiling by array (11)
ChIP-seq (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
Other (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2025 (1645)
2022 (1373)
2023 (1282)
2024 (1250)
2021 (1059)
2020 (808)
2019 (484)
2018 (379)
2017 (364)
2016 (315)
2015 (248)
2026 (211)
2014 (172)
2013 (98)
2012 (61)
2011 (47)
2009 (29)
2010 (24)
2008 (13)
2005 (7)
2006 (7)
2007 (6)
2004 (6)
2002 (3)
2003 (2)
1999 (1)
1998 (1)

Lab affiliation

Zhejiang University (4)
Soochow University (3)
State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
Department of Biochemistry UT Southwestern Medical Center (2)
Department of Endocrinology, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China. (2)
Yangzhou University (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
The Fifth Affiliated Hospital of Guangzhou Medical University (2)
ETH Zurich (2)
Shandong Academy of Agricultural Sciences, Jinan, Shandong, China (2)
westlake.edu.cn (2)
1Cancer Institute, the Second Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou 310029, China 2Cancer Center, Zhejiang University, Hangzhou 310058, China 3Research Center for Life Science and Human Health, Binjiang Institute of Zhejiang University, Hangzhou 310053, China (1)
The Second Affiliated Hospital of Zhejiang University, Medicine Cancer Institute (1)
Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (1)
Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Fudan University Shanghai Cancer Center from China (1)
Fudan University, Shanghai, China (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
Institute of Plant Science of Paris-Saclay (IPS2), CNRS, INRA, Université Paris-sud 11, Université Paris-Saclay, 91405 Orsay, France (1)
Tianjin university of Traditional Chinese Medicine, Tianjin 300193, China (1)
School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen, Guangdong, China. (1)
Peking University Institute of Advanced Agricultural Sciences, (1)
National key laboratory of medical immunology, Naval medical university, Shanghai, China (1)
China Pharmaceutical University (1)
Institute of Blood Transfusion, Chinese Academy of Medical Sciences & Peking Union Medical College, Chengdu, China, 610052 (1)

Tags

xref:PubMed:23747202 (1)
xref:PubMed:30457566 (1)
xref:PubMed:32055844 (1)
xref:PubMed:34412677 (1)
xref:PubMed:31903125 (1)

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Facilitation of MrgprD by TRP-A1 promotes neuropathic pain.

Not available

S-EPMC6988841 | biostudies-literature

Comprehensive mutation screening for 10 genes in Chinese patients suffering very early onset inflammatory bowel disease.

Not available

S-EPMC4917618 | biostudies-literature

Angiopoietin-3 is tethered on the cell surface via heparan sulfate proteoglycans.

Not available

S-EPMC1184059 | biostudies-literature

A Chinese Prescription Yu-Ping-Feng-San Administered in Remission Restores Bronchial Epithelial Barrier to Inhibit House Dust Mite-Induced Asthma Recurrence.

Not available

S-EPMC7006455 | biostudies-literature

Network Pharmacology-Based Analysis of Xiao-Xu-Ming Decoction on the Treatment of Alzheimer's Disease.

Not available

S-EPMC7774966 | biostudies-literature

Chromatin remodeling: demethylating H3K4me3 of type I IFNs gene by Rbp2 through interacting with Piasy for transcriptional attenuation.

Not available

S-EPMC6137643 | biostudies-literature

Mechanism of interventional effect and targets of Zhuyu Pill in regulating and suppressing colitis and cholestasis

Zhuyu pill (ZYP) is a traditional Chinese medicine prescription composed of two drugs, Coptis chinensis Franch. and Tetradium ruticarpum (A. Jussieu) T. G. Hartley, and is commonly used in the clinical treatment of diseases of the digestive system. However, the mechanism underly...

2022-11-02 | MTBLS4980 | MetaboLights

Detecting Key Functional Components Group and Speculating the Potential Mechanism of Xiao-Xu-Ming Decoction in Treating Stroke.

Not available

S-EPMC9136080 | biostudies-literature

Tet and TDG Mediate DNA Demethylation Essential for MET in Somatic Cell Reprogramming

Tet-mediated DNA oxidation is a new type of epigenetic modification in mammals and its role in the regulation of cell fate transition remains poorly understood. Here, we derive mouse embryonic fibroblasts (MEFs) deleted in all three Tet genes and examine their capability to be reprogrammed into iPS ...

ORGANISM(S): Mus musculus

2014-02-19 | E-GEOD-52741 | biostudies-arrayexpress

S-phase arrest after vincristine treatment may promote hepatitis B virus replication.

Not available

S-EPMC4316092 | biostudies-literature

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10265 Results

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Organisms

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CHEBI ID

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