Xue Chen C - OmicsDI

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Unknown (2502)
Proteomics (119)
Genomics (38)
Transcriptomics (31)
Metabolomics (23)

Organisms

Homo sapiens (126)
Mus musculus (23)
Escherichia coli (7)
Oryza sativa (6)
Rattus norvegicus (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Rattus rattus (2)
Populus tremula x Populus alba (1)
Oryza sativa Japonica Group (1)
Triticum aestivum (1)
Arabidopsis thaliana (1)
Carassius gibelio (1)
Chlorocebus sabaeus (1)
Cronobacter sakazakii ATCC BAA-894 (1)
Danio rerio (1)
Drosophila melanogaster (1)
Macaca fascicularis fascicularis (1)
Macaca mulatta (1)
Magallana gigas (1)
Mus (1)
Nicotiana tabacum (1)
Saccharomyces cerevisiae (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Bos taurus (1)
Camellia sinensis (1)
Culter alburnus (1)
Dugesia japonica (1)
Klebsiella pneumoniae (1)
Parasynechococcus marenigrum WH 8102 (1)
Punica granatum (1)

Repository

iProX (59)
pride (57)
EGA (38)
biostudies-arrayexpress (31)
MetaboLights (21)
MassIVE (3)
GNPS (2)

Tissue

Cell culture (18)
Blood plasma (4)
Liver (4)
Lung (4)
Brain (3)
Leaf (3)
Testis (3)
Blood cell (2)
Epithelial cell (2)
Kidney (2)
Plant cell (2)
Seedling (2)
Thyroid gland (2)
Blood serum (1)
Cell suspension culture (1)
Cholangiocarcinoma cell line (1)
Colon (1)
Early embryonic cell (1)
Fruit (1)
Heart (1)
Intervertebral disc (1)
Malignant cell (1)
Monocyte (1)
Pancreas (1)
Pericyte cell (1)
Permanent cell line cell (1)
Root (1)
Sertoli cell (1)
Sperm (1)
Stem cell (1)

Disease

Breast cancer (3)
Acute leukemia (2)
Malignant neoplasm of ovary (2)
Thyroid cancer (2)
Cholangiocarcinoma (1)
Disease free (1)
Neuroblastoma (1)
Non-small cell lung carcinoma (1)
Oligospermia (1)

Technology Type

Mass Spectrometry (57)
Shotgun proteomics (28)
Mass spectrometry (17)
Bottom-up proteomics (11)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry assay (4)
Data-dependent acquisition (4)
Illumina HiSeq 2000 (3)
Data-independent acquisition (3)
Gel-based experiment (3)
Top-down proteomics (3)
Mass spectrometry imaging (2)
HumanOmniExpress-12 v1.1 BeadChip-GenCall (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina HiSeq 2000 (ILLUMINA) (1)
Illumina HiSeq 2000, Illumina HumanOmni2-5M-8v1-1_B (1)
Illumina HiSeq 2000, Illumina HumanOmni2-5_8v1_A (1)
ZCall, HumanExome_12v1.1_A -GenCall (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (9)
Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - alternating - reverse-phase (3)
Illumina HiSeq 2000 (2)
Q Exactive HF (2)
TripleTOF 6600 (2)
Xevo G2 QTOF (Waters) (2)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Elite (1)
API 4000 QTRAP (AB Sciex) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Quattro micro API (Waters) (1)
Wates I-Class/XEVO-G2 XS QTOF (1)

Publication Date

2022 (24)
2021 (23)
2023 (20)
2025 (16)
2026 (15)
2024 (15)
2020 (14)
2019 (8)
2014 (6)
2013 (5)
2018 (5)
2017 (5)
2015 (4)
2012 (4)
2010 (4)
2011 (3)
2016 (2)

CHEBI ID

CHEBI:55328 (7)
CHEBI:17368 (6)
CHEBI:28875 (6)
CHEBI:15354 (5)
CHEBI:16040 (5)
CHEBI:16335 (5)
CHEBI:16566 (5)
CHEBI:16704 (5)
CHEBI:16828 (5)
CHEBI:17169 (5)
CHEBI:17295 (5)
CHEBI:17521 (5)
CHEBI:17620 (5)
CHEBI:17748 (5)
CHEBI:28997 (5)
CHEBI:46961 (5)
CHEBI:7916 (5)
CHEBI:9347 (5)
CHEBI:10782 (4)
CHEBI:134190 (4)
CHEBI:143235 (4)
CHEBI:15756 (4)
CHEBI:15843 (4)
CHEBI:15891 (4)
CHEBI:16235 (4)
CHEBI:16359 (4)
CHEBI:16390 (4)
CHEBI:16393 (4)
CHEBI:16424 (4)
CHEBI:16525 (4)

Metabolite Name

Arachidonic acid (7)
Uridine (7)
Adenine (6)
Adenosine (6)
Buprenorphine (6)
Choline (6)
Creatine (6)
Hypoxanthine (6)
L-Glutamine (6)
L-Tyrosine (6)
Taurine (6)
Thymidine (6)
4-Hydroxybenzaldehyde (5)
Docosahexaenoic acid (5)
Indole (5)
L-Histidine (5)
L-Phenylalanine (5)
N-Acetylserotonin (5)
Tetradecanedioic acid (5)
Uracil (5)
Valine (5)
Xanthosine (5)
12-Hydroxydodecanoic acid (4)
16-Hydroxyhexadecanoic acid (4)
3-Hydroxybutyric acid (4)
4-Pyridoxic acid (4)
Azelaic acid (4)
Benzyl alcohol (4)
Bilirubin (4)
Citric acid (4)

Study type

RNA-seq of coding RNA (16)
Transcription profiling by array (9)
RNA-seq of non coding RNA (2)
Cell line - Single-cell sequencing (1)
Unknown experiment type (1)
Other (1)
Methylation profiling by array (1)

Release Date

2025 (447)
2022 (342)
2023 (314)
2024 (308)
2021 (233)
2020 (199)
2019 (133)
2018 (103)
2017 (90)
2016 (78)
2015 (61)
2026 (57)
2014 (51)
2013 (35)
2012 (22)
2010 (18)
2011 (16)
2009 (9)
2008 (7)
2007 (4)
2006 (3)
2002 (2)
2003 (1)

Lab affiliation

Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, China (2)
Sichuan University (2)
1. College of Veterinary Medicine, Northwest Agriculture and Forestry University, Yangling 712100, Shaanxi, China; 2. Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling 712100, Shaanxi, China (1)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
1. Nephrology Department of Guilin No. 924 Hospital, Guangxi Key laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research, 541002, Guilin, Guangxi, People’s Republic of China. 2. Clinical Medical Research Center, the Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), 518020, Shenzhen, Guangdong, People’s Republic of China. (1)
Cancer Stem Cell and Translation Medicine Lab, Innovative Cancer Drug Research and Development Engineering Center of Liaoning Province, Department of Oncology, Shengjing Hospital of China Medical University, Shenyang, 110004, China (1)
Center of Reproductive Medicine, Nanjing Jinling Hospital, Clinical School of Medical College, Nanjing University, China. (1)
College of Animal Science and Technology, Key Laboratory of Animal Nutrition and Feed Science of Jilin Province, Key Laboratory of Animal Production Product Quality and Security Ministry of Education, Jilin Agricultural University, China (1)
Dalian Institute of Chemcial and Physics, China (1)
Dalian Institute of Chemical and Physics, Chinese Academy of Sciences (1)
Department of Biochemistry, Purdue University, West Lafayette, IN USA (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Clinical Laboratory, National Center for Respiratory Medicine, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong 510120, China. (1)
Department of General Surgery, Pancreatic Disease Center, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
Department of Plastic Surgery, Affiliated Friendship Plastic Surgery Hospital of Nanjing Medical University, Nanjing Medical University, Nanjing, China (1)
Departments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Dept. Medical Biochemistry and Biophysics, Div. Chemistry I, Karolinska Institutet, Stockholm, Sweden (1)
Fudan University Shanghai Cancer Center, Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China. International Co-operation Laboratory on Signal Transduction, Eastern Hepatobiliary Surgery Institute/National Center for Liver Cancer, Naval Medical University. 225 Changhai Road, 200438 Shanghai, China. (1)
Fujian Agriculture and Forestry University (1)
Guangdong Institute of Microbiology, Guangdong Academy of Sciences (1)
Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, China 510120. (1)
Guangdong Provincial Key Laboratory of Regional Immunity and Diseases, Shenzhen Key Laboratory of Translational Medicine of Tumor, International Cancer Center, Department of Cell Biology and Genetics, School of Medicine, Shenzhen University, Shenzhen, 518055, China. (1)
Hefei University of Technology (1)
Huazhong Agricultural University (1)
Institute of Hydrobiology, Chinese Academy of Sciences (1)
Jiangsu Key Laboratory of Crop Genetics and Physiology/ Key Laboratory of Plant Functional Genomics of the Ministry of Education/ Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou 225009, China (1)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009,China (1)
Key Laboratory Medical molecular Virology, MoE/MoH Shanghai Medical College, Fudan University 138 Yi Xue Yuan Road, Shanghai, China, 200032 (1)

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Dietary xanthophyll improved growth, antioxidant, pigmentation and meat quality in the southern catfish (Silurus soldatovi meridionalis Chen).

Not available

S-EPMC10130616 | biostudies-literature

Multimethodological and multiscale investigation of the therapeutic mechanism of Qian Ji Sheng Xue Pian in treating primary immune thrombocytopenia.

Not available

S-EPMC12797464 | biostudies-literature

Global involvement of lysine crotonylation in protein modification and transcription regulation in rice

Lysine crotonylation (Kcr) is a newly discovered post-translational modification (PTM) existing in mammals. A global crotonylome analysis was undertaken in rice (Oryza sativa L. japonica) using high accuracy nano-LC-MS/MS in combination with crotonylated peptide enrichment. A total of 1,265 lysine c...

ORGANISM(S): Oryza sativa (Rice)

2018-09-20 | PXD010376 | Pride

Sulfadiazine Sodium Improves Dysfunctional Metabolomics in Toxoplasma gondii-infected Mice

Toxoplasma gondii is an obligate intracellular protozoan parasite that poses a severe threat to human health, especially those immune-compromised individuals. Sulfadiazine sodium (SDZ) is widely used for the treatment of human toxoplasmosis. However, systems biology researches on the therapeutic eff...

2019-06-18 | MTBLS852 | MetaboLights

Bu-Shen-Huo-Xue Decoction Ameliorates Diabetic Nephropathy by Inhibiting Rac1/PAK1/p38MAPK Signaling Pathway in High-Fat Diet/Streptozotocin-Induced Diabetic Mice.

Not available

S-EPMC7744471 | biostudies-literature

Xue-Fu-Zhu-Yu capsule in the treatment of qi stagnation and blood stasis syndrome: a study protocol for a randomised controlled pilot and feasibility trial.

Not available

S-EPMC6151047 | biostudies-literature

Hepatic Metabolomics Investigation in Acute and Chronic Murine Toxoplasmosis

Toxoplasma gondii poses a great threat to human health, with no approved vaccine available for the treatment of T. gondii infection. T. gondii infections are not limited to the brain, and may also affect other organs especially the liver. Identification of host liver molecules or pathways involved i...

2019-08-06 | MTBLS586 | MetaboLights

Association between CYP24A1 polymorphisms and the risk of colonic polyps and colon cancer in a Chinese population.

Not available

S-EPMC5537184 | biostudies-literature

HARD-AP-drived RBPome in HEK293 cells, mouse brain and kidney without UV-crosslinking

Identification of RBPs proteome in HEK293 cells and adult mouse brain and kidney which were not treated with UV light before isolation with HARD beads.

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2024-08-26 | PXD053382 | Pride

Rbpome Hard-ap

RBPs proteome in HEK293 cells, mESCs and mouse organs

Identification of RBPs proteome in HEK293 cells, mouse embryonic stem cells (mESCs) and adult mouse primary organs (brain, heart, lung, kidney, liver)

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2024-08-26 | PXD037105 | Pride

Rna-binding proteins

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2713 Results

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