Yan W W - OmicsDI

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Unknown (13403)
Transcriptomics (694)
Proteomics (453)
Genomics (129)
Metabolomics (48)
Multiomics (9)
Other (2)
Models (1)
Genomic (1)

Organisms

Homo sapiens (456)
Mus musculus (200)
Rattus norvegicus (35)
Streptomyces coelicolor (30)
Caenorhabditis elegans (29)
Rhizobium leguminosarum (26)
Streptomyces venezuelae (18)
Drosophila melanogaster (16)
Streptomyces coelicolor A3(2) (15)
Macaca mulatta (12)
Zea mays (9)
Arabidopsis thaliana (9)
Oryza sativa (8)
Danio rerio (7)
Saccharomyces cerevisiae (6)
Bos taurus (5)
Candida albicans (5)
Urocitellus parryii (4)
Cucumis sativus (4)
Escherichia coli str. K-12 substr. MG1655 (4)
Streptomyces griseus (3)
synthetic construct (3)
Macaca fascicularis (3)
Mycobacterium tuberculosis (3)
Oryza sativa Japonica Group (3)
Gallus gallus (3)
Ursus americanus (2)
Glycine soja (2)
Streptomyces clavuligerus (2)
Streptomyces albus (2)

Organisms

Bahaba taipingensis (5)
Hordeum vulgare (1)

Repository

biostudies-arrayexpress (781)
pride (220)
iProX (193)
MetaboLights (44)
EGA (37)
MassIVE (24)
jPOST (10)
ENA (6)
GNPS (4)
PeptideAtlas (3)
PanoramaPublic (2)
BioModels (1)
dbGaP (1)
GPMDB (1)
PAXDB (1)

Tissue

Cell culture (52)
Epithelial cell (24)
Brain (13)
Liver (13)
Leaf (10)
Permanent cell line cell (10)
Testis (9)
Blood serum (7)
Hepatocyte (7)
Kidney (7)
Bone marrow (6)
Heart (6)
Stem cell (5)
Whole body (5)
Lung (5)
Blood cell (5)
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Others (3)
Early embryonic cell (3)
Plant cell (3)
Embryo (3)
HeLa cell (3)
MCF-10A cell (2)
Nasopharyngeal epithelial cell (2)
MDA-MB-231 cell (2)
Placenta (2)
HEK-293T cell (2)
Gastric adenocarcinoma cell (2)
Seed (2)
Urine (2)

Disease

Prostate adenocarcinoma (10)
Breast cancer (7)
Disease free (7)
Colon cancer (4)
Liver cancer (3)
Mastitis (2)
Hepatocellular carcinoma (2)
Gastric adenocarcinoma (2)
Cervix carcinoma (2)
Type 2 diabetes mellitus (2)
High bone mineral density (1)
K173 influenza (1)
Locally advanced breast carcinoma (LABC; non-inflammatory) (1)
Chronic myelogenous leukemia (1)
Normal (1)
Not Available (1)
Gastric ulcer (1)
Limb ischemia (1)
Insomnia (1)
Residual chronic schizophrenia (1)
Esophageal disease (1)
Female breast cancer (1)
Gonorrhea (1)
Liver cirrhosis (1)
Esophageal cancer (1)
Stomach cancer (1)
Myopia (1)
Neck carcinoma (1)
Brain ischemia (1)
Mixed disorder as reaction to stress (1)

Technology Type

Mass Spectrometry (220)
Shotgun proteomics (102)
Bottom-up proteomics (43)
Mass spectrometry (36)
Data-dependent acquisition (22)
Affinity purification coupled with mass spectrometry proteomics (20)
Gel-based experiment (19)
Top-down proteomics (13)
NMR spectroscopy (7)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Data-independent acquisition (5)
SWATH MS (4)
Proteogenomics (2)
MSE (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina MiSeq, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
Affinity proteomics (1)
All-ion fragmentation (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2000 (17)
Illumina NovaSeq 6000 (10)
Illumina HiSeq 4000 (7)
Illumina HiSeq 2500 (5)
NextSeq 500 (5)
Illumina MiSeq (4)
NextSeq 550 (2)
Xevo G2-XS QTof (2)
TripleTOF 6600 (2)
SYNAPT G2-Si (2)
TSQ Altis (2)
Xevo G2 XS Tof (2)
MGISEQ-2000RS (1)
Illumina HiSeq 4000 system (1)
MA900, Sony (1)
10x Chromium Controller (1)
GeneChip Hybridization Oven 645 (1)
I686 (1)
GenePix 4000B Microarray Scanner (Molecular Devices). (1)
Dell PowerEdge 630 with Intel Xeon E5-2630 processor (8 cores 16 threads) and 94 GB memory running CentOS Linux release 7.5.1804. (1)
IScan (Illumina) (1)
Illumina Genome Analyzer (1)
GeneChip Scanner 3000 7G (1)
ScanArray 5000 [PerkinElmer] (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
HiSeq X Ten (1)
Illumina HiSeq 3000 (1)
TSQ Quantis (1)

Publication Date

2013 (124)
2012 (107)
2015 (95)
2014 (95)
2010 (87)
2011 (81)
2022 (71)
2016 (71)
2025 (68)
2024 (54)
2023 (52)
2021 (50)
2019 (45)
2020 (44)
2008 (31)
2009 (29)
2026 (27)
2017 (23)
2018 (19)
2007 (9)
2006 (8)
2005 (5)
2004 (1)

UNIPROT ID/AC

H9J4V7_BOMMO (1)
H9JI11_BOMMO (1)
B0FPE7_BOMMO (1)
H9J4G2_BOMMO (1)
H9J502_BOMMO (1)
H9B457_BOMMO (1)
H9J6U8_BOMMO (1)
H9JU96_BOMMO (1)
EF2_BOMMO (1)
H9JB50_BOMMO (1)
H9JC27_BOMMO (1)
H9JX51_BOMMO (1)
H9J1A5_BOMMO (1)
H9IS38_BOMMO (1)
H9JDV4_BOMMO (1)
Q2F605_BOMMO (1)
H9JXQ6_BOMMO (1)
H9JHU3_BOMMO (1)
H9JYJ8_BOMMO (1)
H9JMY8_BOMMO (1)
H9JMQ8_BOMMO (1)
H9J5D8_BOMMO (1)
H9JDG1_BOMMO (1)
H9JAZ9_BOMMO (1)
H9JTY2_BOMMO (1)
H9JXB3_BOMMO (1)
H9J885_BOMMO (1)
H9JCD8_BOMMO (1)
H9JHU4_BOMMO (1)
Q3LB95_BOMMO (1)

ENSEMBL ID

ENSG00000247315 (3)
ENSG00000147251 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:57704 (1)
CHEBI:873 (1)
CHEBI:62321 (1)
CHEBI:7402 (1)
CHEBI:89951 (1)
CHEBI:40559 (1)
CHEBI:4108 (1)
CHEBI:62214 (1)
CHEBI:3596 (1)
CHEBI:4105 (1)
CHEBI:27421 (1)
CHEBI:46951 (1)
CHEBI:699 (1)
CHEBI:94796 (1)
CHEBI:84839 (1)
CHEBI:42802 (1)
CHEBI:58708 (1)
CHEBI:58709 (1)
CHEBI:58710 (1)
CHEBI:5745 (1)
CHEBI:9825 (1)
CHEBI:58642 (1)
CHEBI:47928 (1)
CHEBI:814 (1)
CHEBI:58445 (1)
CHEBI:70959 (1)
CHEBI:6864 (1)
CHEBI:6306 (1)
CHEBI:6223 (1)
CHEBI:646 (1)

Metabolite Name

L-Phenylalanine (10)
Inosine (10)
L-Proline (9)
L-Tryptophan (9)
Creatinine (9)
L-Valine (9)
Uracil (8)
Taurine (8)
Uridine (8)
L-Tyrosine (8)
Hypoxanthine (8)
Pyruvic acid (7)
D-Glucose (7)
L-Alanine (7)
Benzoic acid (7)
L-Glutamic acid (7)
Citric acid (7)
Glutaric acid (7)
Thymidine (7)
Creatine (7)
L-Isoleucine (7)
Phenylacetaldehyde (6)
Glycine (6)
Glycine (6)
L-Lysine (6)
Indoleacetaldehyde (6)
Carnosine (6)
Glutathione (6)
L-Malic acid (6)
Pyridoxine (6)

First Public Date

2026 (5)
2014 (1)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
Beijing proteome research center (3)
Cedars-Sinai Medical Center (3)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
Zhejiang University (3)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences (2)
College of Life Sciences (2)
National Center for Advancing Translational Sciences, National Institutes of Health (2)
State Key Laboratory of Metabolism and Regulation in Complex Organisms, Hubei Provincial Research Center for Basic Biological Sciences, College of Life Sciences, TaiKang Center for Life and Medical Sciences, Wuhan University (2)
SJTU (2)
School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
School of Biomedical Sciences and Department of Pathology, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China (2)
University of Science and Technology of China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, Guangdong, P. R. China (2)
westlake.edu.cn (2)
Sichuan University (2)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (2)
Department of Otolaryngology, Head and Neck Surgery, Children’s Hospital Capital Institute of Paediatrics (1)
Research Center, The Second Affiliated Hospital of Dalian Medical University, Dalian, China (1)
Department of Emergency Medicine, Xinqiao Hospital, Army Medical University, 83 Xinqiao Street, Shapingba District, Chongqing 400037, China (1)
Medicine and Pharmacy Research Center, Binzhou Medical University (1)
1. Fisheries College, Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Jimei University, Xiamen, Fujian, 361021, PR China (1)
Chengdu university of traditional chinese medicine (1)
Department of Microbiology & Immunology School of Medicine University of Louisville CTRB, Room 309 Louisville, KY, USA 40202 (1)
Changchun Veterinary Research Institute (1)
animal immunology group, lanzhou veterinary research institute (1)
1Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China 2NHC Key Laboratory of Carcinogenesis, Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China (1)

IsPrivate

False (1)

Modification

Not available (1)

Study type

Transcription profiling by array (465)
RNA-seq of coding RNA (115)
ChIP-seq (76)
Comparative genomic hybridization by array (21)
Methylation profiling by array (20)
RNA-seq of non coding RNA (18)
Methylation profiling by high throughput sequencing (9)
Unknown experiment type (8)
ChIP-chip by tiling array (8)
High-throughput sequencing (6)
ChIP-chip by array (6)
Other (6)
Transcription profiling by SAGE (3)
Human - High-throughput sequencing (3)
RNA-seq of coding RNA from single cells (3)
RNAi profiling by array (2)
RNA-seq of total RNA (2)
Transcription profiling by MPSS (1)
Transcription profiling by high throughput sequencing (1)
Animal - One-color microarray (1)
One-color microarray (1)
Human - Single-cell sequencing (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

2025 (2189)
2022 (1810)
2024 (1709)
2023 (1669)
2021 (1410)
2020 (957)
2019 (770)
2018 (616)
2017 (541)
2016 (466)
2015 (412)
2014 (319)
2026 (295)
2013 (286)
2012 (223)
2011 (166)
2010 (129)
2009 (66)
2008 (61)
2007 (32)
2006 (19)
2005 (15)
2004 (8)
2003 (8)
2001 (5)
2002 (2)
1999 (1)

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Genome-Wide Yan Chromatin Occupancy in Drosophila Embryos

The ETS transcriptional repressor Yan functions as part of a developmental switch that in response to receptor tyrosine kinase signaling, transitions from a high-Yan to a low-Yan state to direct specification of a variety of cell fates. To date very few direct target genes have been identified, nor ...

ORGANISM(S): Drosophila melanogaster

2013-03-01 | E-GEOD-34038 | biostudies-arrayexpress

Genome-wide maps of Yan chromatin association

High-resolution genome-wide binding of Yan used to confirm the presence of high-density regions seen in ChIP-chip ChIP-Seq of Yan protein in stage 11 Drosophila embryos

ORGANISM(S): Drosophila melanogaster

2013-03-01 | E-GEOD-34040 | biostudies-arrayexpress

HERV-W ENV Induces Innate Immune Activation and Neuronal Apoptosis via linc01930/cGAS Axis in Recent-Onset Schizophrenia.

Not available

S-EPMC9917391 | biostudies-literature

The complete chloroplast genome of Primula tsiangii W. W. Smith (Primulaceae): a karst endemic primrose in Southwest China.

Not available

S-EPMC7706616 | biostudies-literature

HERV-W Envelope Triggers Abnormal Dopaminergic Neuron Process through DRD2/PP2A/AKT1/GSK3 for Schizophrenia Risk.

Not available

S-EPMC8777930 | biostudies-literature

P6 Mouse Sertoli Cell Small RNA seq

This study annotates the NGS reads in a Sertoli cell sncRNA library. In addition to known sncRNAs, we also identified numerous novel sncRNAs expressed by Sertoli cells. Our data suggest that the Sertoli cell sncRNA transcriptome predominantly consists of miRNAs, piRNA-like RNAs, tRNAs and snoRNAs....

ORGANISM(S): Mus musculus

2012-09-08 | E-GEOD-40692 | biostudies-arrayexpress

O-coordinated W-Mo dual-atom catalyst for pH-universal electrocatalytic hydrogen evolution.

Not available

S-EPMC7274769 | biostudies-literature

The complete genome sequence of Vibrio aestuarianus W-40 reveals virulence factor genes.

Not available

S-EPMC6011983 | biostudies-literature

Domesticated HERV-W env contributes to the activation of the small conductance Ca²⁺-activated K⁺ type 2 channels via decreased 5-HT4 receptor in recent-onset schizophrenia.

Not available

S-EPMC10006216 | biostudies-literature

The complete genome sequence of Exiguobacterium arabatum W-01 reveals potential probiotic functions.