Yang Ke K - OmicsDI

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Unknown (754)
Proteomics (32)
Transcriptomics (12)
Metabolomics (11)

Organisms

Homo sapiens (16)
Alphavirus (10)
Anemia (10)
Archaea (10)
Bacteria (10)
Betaherpesvirinae (10)
Borrelia (10)
Clostridium perfringens (10)
Cytomegalovirus (10)
Dengue virus (10)
Eukaryota (10)
Hepatitis B virus (10)
Human alphaherpesvirus 1 (10)
Human betaherpesvirus 5 (10)
Human immunodeficiency virus (10)
Influenza A virus (10)
Influenza C virus (10)
Japanese encephalitis virus group (10)
Kamptonema sp. (10)
Listeria monocytogenes (10)
Mammarenavirus (10)
Mus musculus (9)
Gluconobacter oxydans 621H (1)
Gallus gallus (1)
Glaesserella parasuis (1)
Hibiscus cannabinus (1)
Hordeum vulgare (1)
Macaca fascicularis fascicularis (1)
Pseudomonas aeruginosa (1)
Rattus norvegicus (1)

Repository

iProX (20)
biostudies-arrayexpress (12)
MetaboLights (11)
pride (10)
MassIVE (2)

Tissue

Cell culture (2)
Testis (2)
Early embryonic cell (1)
Embryo (1)
Epithelial cell (1)
Epithelial ovarian cancer cell (1)
Keratinocyte (1)
Liver (1)
Lung (1)
Ovarian fibroblast (1)
Skin (1)

Disease

Disease free (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass spectrometry (10)
Mass Spectrometry (10)
Bottom-up proteomics (5)
Shotgun proteomics (3)
Proteogenomics (2)
Mass spectrometry assay (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Q Exactive (2)
Liquid Chromatography MS - negative - reverse phase (2)
HiSeq X Ten (1)
Illumina HiSeq 2000 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Ultra-High Performance Liquid Chromatography-Q Exactive Plus MS&MS/MS-Negative(UHPLC-MS&MS/MS(Negative))(Thermo Scientific) (1)
Ultra-High Performance Liquid Chromatography - Time Of Flight MS - Negative (UPLC-TOF MS(Negative)) (Waters) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - positive (1)

Publication Date

2023 (13)
2024 (8)
2022 (7)
2026 (7)
2025 (3)
2021 (2)
2015 (2)
2012 (2)
2010 (2)
2020 (2)
2014 (1)
2013 (1)
2008 (1)
2007 (1)
2017 (1)
2019 (1)
2018 (1)

CHEBI ID

CHEBI:16359 (4)
CHEBI:28865 (4)
CHEBI:35038 (3)
CHEBI:80774 (3)
CHEBI:143745 (2)
CHEBI:182784 (2)
CHEBI:143757 (2)
CHEBI:173703 (2)
CHEBI:195271 (2)
CHEBI:9347 (2)
CHEBI:27410 (2)
CHEBI:73218 (2)
CHEBI:139138 (2)
CHEBI:64032 (2)
CHEBI:82966 (2)
CHEBI:74965 (2)
CHEBI:34687 (2)
CHEBI:16755 (2)
CHEBI:16811 (2)
CHEBI:73858 (2)
CHEBI:17752 (2)
CHEBI:34494 (2)
CHEBI:16610 (2)
CHEBI:116314 (2)
CHEBI:55328 (2)
CHEBI:75342 (2)
CHEBI:72998 (2)
CHEBI:64489 (2)
CHEBI:27997 (2)
CHEBI:36259 (2)

Metabolite Name

Tris(2-butoxyethyl) phosphate (3)
Cholic acid (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Monoolein (2)
Elaidic acid (2)
9(10)-EpOME (2)
NCGC00168953-02_C47H76O17_(3beta,5xi,9xi,22beta)-22,24-Dihydroxyolean-12-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-alpha-L-arabinopyranosyl-(1->2)-beta-D-glucopyranosiduronic acid (1)
Sodium taurochenodeoxycholate (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
3beta-Hydroxy-5-cholenoic acid (1)
4-quinolinecarboxylic acid (1)
Lyso PC (22:6) (1)
Methyl (3R,4R,5R)-5-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxy-3,4-dihydroxycyclohexene-1-carboxylate (1)
Propanoic acid, 3,3'-thiobis-, didodecyl ester (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
LU052302 Acetyl tributyl citrate|tributyl 2-acetyloxypropane-1,2,3-tricarboxylate (1)
1-Hexadecanoyl-sn-glycerol (1)
9-Octadecenamide, (Z)- (1)
Ethanol, 2-(2-butoxyethoxy)- (1)
11-Dehydroxy-mogroside IIE (1)
Kuguaglycoside E (1)

Study type

Transcription profiling by array (4)
Methylation profiling by array (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Other (1)
RNA-seq of total RNA (1)
RNA-seq of coding RNA (1)

Release Date

2022 (100)
2024 (86)
2023 (79)
2021 (78)
2025 (75)
2020 (72)
2018 (68)
2015 (38)
2019 (37)
2017 (34)
2016 (26)
2013 (17)
2012 (12)
2014 (11)
2026 (10)
2010 (8)
2009 (7)
2011 (6)
2008 (1)
2007 (1)

Lab affiliation

Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (3)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Academy of Orthopedics, Guangdong Province, Guangdong Provincial Key Laboratory of Bone and Joint Degeneration Diseases, The Third Affiliated Hospital of Southern Medical University, Guangzhou, Guangdong, China (1)
Cell Biology Department, Harvard Medical School (1)
NO.2 Yabao Road, Beijing Province (1)
State Key Laboratory of Membrane Biology, Institute of Zoology, Chinese Academy of Sciences (1)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing Institute of Lifeomics, 102206 Beijing, China (1)

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Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

Coenzyme Q₁₀ alleviates tacrolimus-induced mitochondrial dysfunction in kidney.

Not available

S-EPMC6902707 | biostudies-literature

Evaluation of new Corvis ST parameters in normal, Post-LASIK, Post-LASIK keratectasia and keratoconus eyes.

Not available

S-EPMC7105482 | biostudies-literature

P.aeruginosa PAO1+Pht Tandem Mass Tag (TMT)-based quantitative proteomic analysis

To study the changes in the proteomics profile of P. aeruginosa PAO1 upon Pht addition, TMT was used as the labeling strategy for comparative quantitative proteomic analysis.

ORGANISM(S): Pseudomonas Aeruginosa

2022-03-18 | PXD032384 |

Identification of Key Differentially Expressed mRNAs, miRNAs, lncRNAs, and circRNAs for Xp11 Translocation Renal Cell Carcinoma (RCC) Based on Whole-Transcriptome Sequencing.

Not available

S-EPMC10047933 | biostudies-literature

Lobar or sublobar resection for early-stage second primary lung cancer ≤ 3 cm in size: a SEER population-based study.

Not available

S-EPMC10645613 | biostudies-literature

Genome-Wide Survey and Expression Analysis of the KT/HAK/KUP Family in Brassica napus and Its Potential Roles in the Response to K⁺ Deficiency.

Not available

S-EPMC7763660 | biostudies-literature

Insufficient radiofrequency ablation promotes angiogenesis of residual hepatocellular carcinoma via HIF-1α/VEGFA.

Not available

S-EPMC3352883 | biostudies-literature

Targeting the SREBP-dependent lipidomic reprogramming by virus infection for broad-spectrum therapeutic intervention

Viruses are obligate intracellular parasites that exploit the host metabolic machineries to meet their extraordinary biosynthetic demands. Integrative transcriptomic and lipidomic profiling confirmed that Middle East respiratory syndrome coronavirus (MERS-CoV) infection reprograms the host lipid met...

2018-11-26 | MTBLS762 | MetaboLights

Quantitative thiol reactivity profiling

Cysteine is unique among all protein-coding amino acids owing to its intrinsically high nucleophilicity. The cysteinyl thiol group can be covalently modified by both a broad range of redox mechanisms and various electrophiles derived from exogenous or endogenous sources. Measuring proteomic cysteine...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2020-07-24 | PXD016048 | Pride

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