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TranscriptomicsGene expression changes in feeding female and male lone star ticks, Amblyomma americanum (L)
A collection of 1145 clones from an EST project on female tick salivary gland genes was hybridized on glass slides to RNA extracted from several feeding stages of adult female tick salivary glands, including unfed and replete, and from adult male ticks, either unfed or fed in the presence or absence...
ORGANISM(S): Amblyomma americanum 
2010-06-11 | E-GEOD-5010 | biostudies-arrayexpress
ProteomicsProtein interaction AP-MS data for TAP-CSAG1 and TAP-CSAG2 from HEK293 cells
Ten 15 cm2 plates of HEK293 cells stably expressing TAP-vector, TAP-CSAG1, or TAP-CSAG2 were lysed with TAP lysis buffer (10% (v/v) glycerol, 50 mM HEPES-KOH pH 7.5, 100 mM KCl, 2 mM EDTA, 0.1% (v/v) NP-40, 10 mM NaF, 0.25 mM Na3VO4, 50 mM β-glyerolphosphate, 2 mM DTT, and 1X protease inhibitor cock...
ORGANISM(S): Homo sapiens (Human) 
2020-09-01 | PXD020231 | Pride
Csag1 csag2 
UnknownThe impact of similarity metrics on cell-type clustering in highly multiplexed in situ imaging cytometry data.
Not available
S-EPMC10625459 | biostudies-literature
UnknownscFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction.
Not available
S-EPMC9563679 | biostudies-literature
GenomicsBRG1 recruitment by transcription factors MITF and SOX10 defines a specific configuration of regulatory elements in the melanocyte lineage (ChIP-seq)
Microphthalmia-associated transcription factor (MITF) is the master regulator of the melanocyte lineage. By tandem affinity purification and mass spectrometry, we present a comprehensive characterisation of the MITF interactome comprising multiple novel cofactors involved in transcription, DNA repli...
ORGANISM(S): Homo sapiens 
2015-04-02 | E-GEOD-61965 | biostudies-arrayexpress
Transcriptomicsregulation of Listeria monocytogenes internalin-like genes by Ï?B and PrfA as revealed by subgenomic microarray analyses
The Listeria monocytogenes genome contains more than 20 genes that encode cell surface-associated proteins termed internalins, which are characterized by the presence of multiple leucine-rich repeats. Subsets of internalin genes have been reported previously as transcriptionally regulated by the st...
ORGANISM(S): Listeria monocytogenes 
2010-06-11 | E-GEOD-6421 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human HEK293 cells transfected with either wild type or delta exon 4 mutants of surfacant protein C
Mutations in the gene encoding surfactant protein C (SFTPC) have been linked to interstitial lung disease in children and adults. Expression of the index mutation, SP-Cdeltaexon4, in transiently transfected cells and type II cells of transgenic mice resulted in misfolding of the proprotein, activat...
ORGANISM(S): Homo sapiens 
2007-09-28 | E-GEOD-2980 | biostudies-arrayexpress
GenomicsGenome wide association study for Bladder Cancer Risk

This study funded by the National Cancer Institute (NCI) involves conducting a genome-wide association study of common genetic variants to identify markers of susceptibility to bladder cancer.

This bladder GWAS has led to the discovery of three novel regions in the genome associated with...

phs000346.v1.p1 | EGA
GenomicsDAC for Duke-NUS genomic sequencing projects
Data Access Committee EGAC00001000256
EGAC00001000256 | EGA
UnknownEvaluating stably expressed genes in single cells.
Not available
S-EPMC6748759 | biostudies-literature
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