Yang Run R - OmicsDI

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Unknown (284)
Proteomics (119)
Transcriptomics (108)
Metabolomics (55)
Genomics (9)

Organisms

Homo sapiens (85)
Mus musculus (56)
Rattus norvegicus (28)
Saccharomyces cerevisiae (10)
Drosophila melanogaster (8)
Rattus rattus (2)
Mycobacterium tuberculosis (2)
Streptococcus pneumoniae (2)
Escherichia coli (2)
Cucumis sativus (2)
Zea mays (2)
Arabidopsis thaliana (2)
Capsicum annuum (2)
Streptococcus mutans (1)
Oryza sativa Indica Group (1)
Schizosaccharomyces pombe (1)
Bos taurus (1)
Glycine max (1)
Canis lupus familiaris (1)
Pseudomonas aeruginosa (1)
Actinoplanes sp. SE50/110 (1)
Danio rerio (1)
Vibrio cholerae (1)
Amphiroa fragilissima (1)
Bacillus thuringiensis serovar kurstaki str. HD73 (1)
Bacteria (1)
Cavia porcellus (1)
Dipsacus asperoides (1)
Erysipelotrichaceae bacterium (1)
Halimeda opuntia (1)

Repository

biostudies-arrayexpress (119)
pride (114)
MetaboLights (55)
MassIVE (3)
PeptideAtlas (2)

Tissue

Cell culture (20)
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Whole body (7)
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Heart (6)
Liver (6)
Cell suspension culture (5)
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Blood plasma (3)
Blood serum (3)
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Testis (3)
Plasma Non-glyco (2)
Blood (2)
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Embryonic stem cell (2)
Hepatocyte (2)
Leukocyte (2)
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Urine (2)

Disease

Disease free (4)
Hepatocellular carcinoma (3)
Porphyria NOS (2)
Normal (2)
Acute leukemia (2)
Bacterial sepsis (2)
Lung cancer (2)
Lymphoma (2)
Melanoma (2)
Pancreatic cancer (2)
Prostate adenocarcinoma (2)
Prostate cancer (2)
RNAi_reagent (2)
Cervical carcinoma (1)
Adenocarcinoma (1)
Alzheimer's disease (1)
Anal canal cancer (1)
Bacterial meningitis (1)
Brain glioblastoma multiforme (1)
Breast cancer (1)
COVID-19 (1)
Cancer (1)
Cardiovascular system disease (1)
Chronic myeloid leukemia (1)
Demyelinating disease (1)
Diastolic heart failure (1)
Diffuse midline glioma (1)
Emphysema (1)
Lung adenocarcinoma (1)
Lupus nephritis (1)

Technology Type

Mass Spectrometry (114)
Shotgun proteomics (57)
Mass spectrometry (45)
Bottom-up proteomics (21)
Affinity purification coupled with mass spectrometry proteomics (12)
Data-dependent acquisition (10)
Data-independent acquisition (10)
Gel-based experiment (10)
Mass spectrometry assay (9)
SWATH MS (9)
Top-down proteomics (7)
NMR spectroscopy (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Glycoproteomics (1)
HDMSE (1)
Immunopeptidomics (1)
SRM/MRM (1)
SomaScan affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (25)
Liquid Chromatography MS - negative - reverse phase (21)
Liquid Chromatography MS - negative - hilic (9)
Liquid Chromatography MS - positive - hilic (9)
Liquid Chromatography MS - negative - reverse-phase (5)
Liquid Chromatography MS - positive - reverse-phase (5)
Gas Chromatography MS - positive (4)
GenePix Professional 4200A [Axon Instruments] (3)
Q Exactive (3)
418 [Affymetrix] (2)
Axon GenePix 4000B scanning hardware (2)
Illumina MiSeq (2)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
Liquid Chromatography MS - (2)
Xevo TQ MS (Waters) (2)
Affymetrix GeneChip Scanner 3000 7G (1)
ScanArray Express HT [PerkinElmer] (1)
NextSeq 2000 (1)
Illumina HiSeq 1500 (1)
MaXis 4G (1)
Orbitrap Fusion Lumos (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
LMJ-SSP/ESI MS (Imaging MS) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2023 (30)
2022 (29)
2026 (25)
2025 (22)
2024 (21)
2005 (21)
2021 (18)
2013 (14)
2020 (13)
2015 (13)
2014 (13)
2012 (10)
2010 (10)
2019 (9)
2008 (8)
2006 (8)
2016 (6)
2007 (6)
2009 (5)
2018 (5)
2011 (3)
2017 (2)
2004 (1)
2003 (1)

UNIPROT ID/AC

A0A024RC46 (2)
A0A0B4J220 (2)
A5A3E0 (2)
A6NCN2 (2)
A6NNZ2 (2)
B3KML9 (2)
B3KT93 (2)
B4DRV9 (2)
B4E3A4 (2)
C9JM50 (2)
C9JRZ8 (2)
C9JZR2 (2)
E7EX29 (2)
E9PB61 (2)
E9PKG0 (2)
E9PRG8 (2)
G5E972 (2)
G8JLB6 (2)
H0Y5B0 (2)
H0Y804 (2)
H0YAR2 (2)
H0YDN1 (2)
H0YJH7 (2)
H0YM50 (2)
I3L4N8 (2)
J3QRK5 (2)
J9JID7 (2)
K7EJJ5 (2)
M0QY37 (2)
O00148 (2)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000247315 (1)

CHEBI ID

CHEBI:17368 (25)
CHEBI:16704 (24)
CHEBI:16708 (22)
CHEBI:16750 (22)
CHEBI:15354 (21)
CHEBI:15891 (21)
CHEBI:16027 (21)
CHEBI:16335 (21)
CHEBI:16856 (20)
CHEBI:17596 (20)
CHEBI:18257 (19)
CHEBI:30769 (19)
CHEBI:16919 (18)
CHEBI:17562 (18)
CHEBI:17568 (18)
CHEBI:18211 (18)
CHEBI:30915 (18)
CHEBI:32816 (18)
CHEBI:6650 (18)
CHEBI:7916 (18)
CHEBI:15741 (17)
CHEBI:17015 (17)
CHEBI:16235 (16)
CHEBI:16811 (16)
CHEBI:17154 (16)
CHEBI:17268 (16)
CHEBI:17533 (16)
CHEBI:17750 (16)
CHEBI:17858 (16)
CHEBI:18012 (16)

Metabolite Name

Taurine (10)
Adenosine (9)
Hypoxanthine (9)
Thymidine (9)
Uridine (9)
Adenine (8)
Choline (8)
Citrulline (8)
Ornithine (8)
Inosine (7)
Pantothenic acid (7)
Uracil (7)
Uric acid (7)
4-Pyridoxic acid (6)
ADP (6)
Adenine (6)
Adenosine (6)
Alanine (6)
Citric acid (6)
Creatine (6)
Creatinine (6)
Glycerophosphocholine (6)
Guanosine (6)
Guanosine (6)
Histidine (6)
Hypoxanthine (6)
Inosine (6)
Oleic acid (6)
Pyruvic acid (6)
Serine (6)

Modification

Not available (1)

Study type

Transcription profiling by array (70)
RNA-seq of coding RNA (24)
ChIP-seq (8)
Transcription profiling by RT-PCR (4)
Other (4)
ChIP-chip by tiling array (2)
Genotyping by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (64)
2022 (46)
2024 (45)
2023 (44)
2021 (24)
2013 (21)
2005 (21)
2020 (19)
2014 (16)
2015 (14)
2012 (11)
2010 (11)
2026 (10)
2019 (10)
2008 (8)
2006 (8)
2009 (6)
2007 (6)
2018 (6)
2016 (5)
2011 (3)
2017 (3)
2004 (1)
2003 (1)

Lab affiliation

Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY (2)
Shanghai Jiao Tong University Affiliated Sixth People's Hospital (2)
The SATCM Key Laboratory for New Resources and Quality Evaluation of Chinese Medicines, Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, P.R. China (2)
1.Department of Otolaryngology-Head and Neck Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China 2.Ear Institute, Shanghai Jiao Tong University School of Medicine, Shanghai, China 3.Shanghai Key Laboratory of Translational Medicine on Ear and Nose Diseases, Shanghai, China (1)
1Institute for Genetics, University of Cologne, Cologne, Germany. 2Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, Germany. 3Center for Molecular Medicine (CMMC), University of Cologne, Cologne, Germany. (1)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
Analytical Biochemistry and Proteomics Unit, IIBCE and Institut Pasteur de Montevideo (1)
Associate Professor, Immunobiology Associate Research Scientist, A2DRC The University of Arizona, USA (1)
Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
Broad Institute, Dana Farber Cancer Institute (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences,Guangzhou, China (1)
CRCM, INSERM, CNRS, Institut Paoli-Calmettes, Aix-Marseille Univ. , 27 Boulevard Leï Roure, 13009, Marseille, France (1)
CVG group, Tenaya Therapeutics Inc., South San Francisco, CA United States (1)
Cancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, 08916, Badalona, Barcelona, Catalonia, Spain. (1)
Cancer Epigenetics Group, Josep Carreras Leukaemia Research Institute, 08916, Badalona, Barcelona, Catalonia, Spain (1)
Cancer Science Institute of Singapore, National University of Singapore (1)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Chair Plant Biotechnology Faculty of Biology University of Freiburg Schaenzlestrasse 1 D-79104 Freiburg Germany (1)
Charles Perkins Centre, University of Sydney (1)
Chengdu University of Traditional Chinese Medicine (1)
China-UK-NYNU-RRES Joint Laboratory of Insect Biology, Nanyang Normal University (NYNU), Nanyang 473061, Henan, People’s Republic of China (1)
College of Animal Sciences and Technology, Huazhong Agricultural University, China (1)
College of Horticulture, Hunan Agricultural University (1)
DIRECTOR, THE PICOWER INSTITUTE FOR LEARNING AND MEMORYAT MIT PICOWER PROFESSOR OF NEUROSCIENCE, DEPARTMENT OF BRAIN AND COGNITIVE SCIENCES SENIOR ASSOCIATE MEMBER, BROAD INSTITUTE (1)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (1)
Deparment of Molecular Biology and Genetics Aarhus University, Denmark (1)
Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, 9713 AV Groningen, The Netherlands. (1)
Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany. (1)

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hRUV: Hierarchical approach to removal of unwanted variation for large-scale metabolomics data

Liquid chromatography-mass spectrometry-based metabolomics studies are increasingly applied to large population cohorts, which run for several weeks or even years in data acquisition. This inevitably introduces unwanted intra- and inter-batch variations over time that can overshadow true biological ...

2021-07-05 | MTBLS2483 | MetaboLights

Systematic and quantitative assessment of hydrogen peroxide reactivity with cysteines across human proteomes

Protein cysteinyl residues are the mediators of hydrogen peroxide (H2O2)-dependent redox signaling. However, site-specific mapping of the selectivity and dynamics of these redox reactions in cells poses a major analytical challenge. Here we describe a chemoproteomic platform to systematically and qu...

ORGANISM(S): Homo sapiens (Human)

2017-08-25 | PXD007153 | Pride