Yang Tang T - OmicsDI

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Unknown (3356)
Proteomics (83)
Transcriptomics (40)
Metabolomics (27)
Genomics (7)
Multiomics (1)

Organisms

Homo sapiens (61)
Mus musculus (33)
Zea mays (4)
Arabidopsis thaliana (4)
Saccharomyces cerevisiae (3)
Rattus norvegicus (3)
Drosophila melanogaster (2)
Bos taurus (2)
Oryza sativa (2)
Trichinella pseudospiralis (2)
Arachis hypogaea (1)
Drosophila simulans (1)
Medicago truncatula (1)
Nicotiana tabacum (1)
Sus scrofa (1)
Cricetulus griseus (1)
Lentinula edodes (1)
Macaca mulatta (1)
Mycolicibacterium smegmatis MC2 51 (1)
Rattus rattus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Flaveria ramosissima (1)
Mycobacterium tuberculosis H37Rv (1)
Mycobacterium tuberculosis OFXR-32 (1)
Sus scrofa domesticus (1)
Tremella (1)

Organisms

Dendroctonus ponderosae (2)

Repository

pride (56)
biostudies-arrayexpress (43)
MetaboLights (27)
iProX (25)
EGA (2)
MassIVE (2)
ENA (2)

Tissue

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Whole body (2)
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Disease

Disease free (8)
Breast cancer (4)
Colitis (2)
Acute leukemia (1)
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Intermediate uveitis (1)
Liver inflammation (1)
Lupus nephritis (1)
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Technology Type

Mass Spectrometry (56)
Mass spectrometry (24)
Shotgun proteomics (24)
Data-dependent acquisition (8)
Gel-based experiment (8)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-independent acquisition (4)
SWATH MS (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Mass spectrometry assay (2)
NMR spectroscopy (2)
Olink affinity proteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (13)
Liquid Chromatography MS - positive - reverse phase (11)
Liquid Chromatography MS - positive - hilic (6)
Liquid Chromatography MS - negative - hilic (4)
Gas Chromatography MS - positive (3)
Nuclear Magnetic Resonance (NMR) - (2)
HiSeq X Ten (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Elite (1)
Q Exactive HF (1)
5975C Series GC/MSD (Agilent) (1)
API 4000 QTRAP (AB Sciex) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Q Exactive (1)
Quattro micro API (Waters) (1)
Ultra-High Performance Liquid Chromatography - Time Of Flight MS - Negative (UPLC-TOF MS(Negative)) (Waters) (1)
Ultra-High Performance Liquid Chromatography-Q Exactive Plus MS&MS/MS-Negative(UHPLC-MS&MS/MS(Negative))(Thermo Scientific) (1)

Publication Date

2023 (22)
2022 (22)
2025 (17)
2021 (15)
2026 (10)
2014 (9)
2024 (8)
2020 (8)
2013 (7)
2011 (5)
2010 (5)
2015 (4)
2012 (4)
2019 (4)
2018 (4)
2016 (3)
2009 (3)
2017 (2)

CHEBI ID

CHEBI:17368 (16)
CHEBI:15354 (13)
CHEBI:17596 (13)
CHEBI:15891 (12)
CHEBI:16704 (12)
CHEBI:16708 (12)
CHEBI:17351 (12)
CHEBI:17568 (12)
CHEBI:17750 (12)
CHEBI:30769 (12)
CHEBI:16040 (11)
CHEBI:16750 (11)
CHEBI:17154 (11)
CHEBI:15355 (10)
CHEBI:15428 (10)
CHEBI:16335 (10)
CHEBI:16449 (10)
CHEBI:16737 (10)
CHEBI:16919 (10)
CHEBI:17015 (10)
CHEBI:17821 (10)
CHEBI:17895 (10)
CHEBI:18183 (10)
CHEBI:25017 (10)
CHEBI:25094 (10)
CHEBI:15741 (9)
CHEBI:15756 (9)
CHEBI:16015 (9)
CHEBI:16020 (9)
CHEBI:16027 (9)

Metabolite Name

Hypoxanthine (10)
Uracil (8)
Choline (7)
Linoleic acid (7)
Adenine (6)
Creatinine (6)
L-Proline (6)
L-Tyrosine (6)
Taurine (6)
Uridine (6)
Adenosine (5)
Inosine (5)
L-Histidine (5)
L-Leucine (5)
Myristic acid (5)
Pyruvic acid (5)
1-Methyladenosine (4)
3-Hydroxyisovaleric acid (4)
5-Hydroxyindoleacetate (4)
Acetylcarnitine (4)
Arachidonic acid (4)
Betaine (4)
Citrate (4)
Citric acid (4)
Creatine (4)
Cytosine (4)
Deoxycholic acid (4)
Deoxyinosine (4)
Glucose (4)
Glutathione (4)

First Public Date

2021 (2)

Study type

RNA-seq of coding RNA (16)
Transcription profiling by array (15)
Comparative genomic hybridization by array (3)
RNA-seq of non coding RNA (3)
Other (2)
ChIP-seq (2)
ChIP-chip by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (561)
2022 (474)
2024 (473)
2023 (398)
2021 (358)
2020 (244)
2019 (169)
2018 (149)
2016 (105)
2017 (99)
2015 (88)
2026 (86)
2014 (68)
2013 (30)
2011 (23)
2012 (20)
2010 (18)
2009 (18)
2008 (6)
2007 (6)
2006 (3)
2005 (1)
2004 (1)
2003 (1)

Lab affiliation

Shanghaitech University (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (3)
Shenzhen Hospital of Southern Medical University (2)
West China Second University Hospital, Sichuan University (2)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1Academy of Orthopedics, Guangdong Province, Guangdong Provincial Key Laboratory of Bone and Joint Degeneration Diseases, The Third Affiliated Hospital of Southern Medical University, Guangzhou, China 2The Third School of Clinical Medicine, Southern Medical University, Guangzhou, China (1)
Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China University of Science and Technology of China, Hefei, Anhui 230026, P. R. China Hefei Cancer Hospital, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China Precision Medicine Research Laboratory of Anhui Province, Hefei, Anhui 230088, P. R. China (1)
CAS Center for Excellence in Molecular Plant Science, Chinese Academic on Science (1)
Cancer Center of Union Hospital, Tongji Medical College,Huazhong University of Science and Technology (1)
College of Life Sciences, Fujian Agriculture and Forestry University, (1)
College of Life Sciences, Shandong Normal University (1)
Cornell University (1)
Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany. (1)
Department of Biochemistry and Pharamcology Bio21 Institute, University of Melbourne (1)
Department of Biochemistry and Pharmacology Bio21 Institute, University of Melbourne (1)
Department of Clinical Laboratory, National Center for Respiratory Medicine, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong 510120, China. (1)
Department of Ophthalmology, Byers Eye Institute, Stanford University, Palo Alto, CA (1)
Institute of Biological Chemistry, Academia Sinica (1)
Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan (1)
Institute of Biophysics, Chinese Academy of Sciences (1)
Institute of Chemistry, Academia Sinica (1)
Institute of Integrative Medicine,Xiangya Hospital,Central South University,Changsha,China (lab head) (1)
Janne Lehtiö Science for Life Laboratory/Karolinska Institutet Cancer Proteomics Mass spectrometry Tomtebodavägen 23 17176 Solna Sweden (1)
Justus Liebig University Giessen Department of Anatomy and Cell Biology Aulweg 123 35392 Giessen (1)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (1)
Key Laboratory of Zoonosis Research, Ministry of Education, Institute of Zoonosis, Jilin University, Changchun 130062, China. (1)
Key Laboratory of Zoonosis Research, Ministry of Education, Institute of Zoonosis/ College of Veterinary Medicine,Jilin University, Changchun, China. (1)
Nanjing Med Univ, State Key Lab Reprod Med, Dept Histol & Embryol, 140 Hanzhong Rd, Nanjing 210029, Jiangsu, Peoples R China. (1)
National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing 102206, PR China (1)
New Cornerstone Science Laboratory, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, China (1)

Tags

xref:PubMed:34637588 (2)
xref:EuropePMC:PMC10220346 (2)
xref:EuropePMC:PMC12239636 (1)

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A polyamine-centric blood-based metabolite panel predictive of poor response to CAR T-cell therapy in large B cell lymphoma

Anti-CD19 chimeric antigen receptor (CAR) T-cell therapy for relapsed or refractory (r/r) large B-cell lymphoma (LBCL) results in durable response in only a subset of patients. MYC overexpression in LBCL tumors is associated with poor response to treatment. We tested whether a MYC-driven polyamin...

2022-10-31 | MTBLS5381 | MetaboLights

Tracing pluripotency of human early embryos and embryonic stem cells by single cell RNA-seq

Find the casual relationship between gene expression network and cellular phenotype at single cell resolution. We collected donated human pre-implatation embryos, and the embryonic stem cells derived from them, isolate individual cells, prepared single cell cDNAs, and sequenced them by HiSeq2000. Th...

ORGANISM(S): Homo sapiens

2013-08-10 | E-GEOD-36552 | biostudies-arrayexpress

Global Mapping of H3K4me1 and H3K4me3 in human CD4+CD25+FOXP3+ Treg cells

Regulatory T cells (Treg) contribute to the crucial immunological processes of self-tolerance and immune homeostasis. However, the mechanisms underlying Treg function and cell fate decisions to differentiate between Treg and conventional T cells (Tconv) remain to be fully elucidated, especially at t...

ORGANISM(S): Homo sapiens

2011-01-31 | E-GEOD-26427 | biostudies-arrayexpress

miRNAs expression in the splenic CD4+ T cells and B cells isolated from MRL/lpr mice at 5 and 16 weeks of age

To identify any differentially expressed miRNAs in the CD4+ T cells of lupus. MicroRNAs (miRNAs) have been implicated as fine-tuning regulators controlling diverse biological processes at the level of posttranscriptional repression. Dysregulation of miRNAs has been described in various disease stat...

ORGANISM(S): Mus musculus

2010-07-06 | E-GEOD-21220 | biostudies-arrayexpress

Rats, Brain, LC-MSMS - iTRAQ-Based Proteomics Analysis Reveals the Effect of Rhubarb in Rats with Ischemic Stroke

In our study, we apply isobaric tag for relative and absolute quantitation (iTRAQ) followed by multidimensional liquid chromatography and tandem MS analysis(LC-MS-MS). The iTRAQ labeling were performed according to the manufacturer's protocol (Applied Biosystems).8 groups of samples were labeled and...

ORGANISM(S): Rattus norvegicus (Rat)

2018-10-24 | PXD006437 | Pride