Yang Yin Y - OmicsDI

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Unknown (4557)
Transcriptomics (737)
Proteomics (169)
Genomics (61)
Metabolomics (18)
Multiomics (7)
Other (3)

Organisms

Homo sapiens (265)
Mus musculus (192)
Saccharomyces cerevisiae (72)
Escherichia coli (26)
Rattus norvegicus (22)
Mycobacterium tuberculosis (14)
Streptococcus pneumoniae (9)
Escherichia coli str. K-12 substr. MG1655 (9)
Schizosaccharomyces pombe (8)
Pseudomonas aeruginosa (8)
Drosophila melanogaster (7)
Candida albicans (7)
Bos taurus (7)
Oryza sativa (6)
Francisella tularensis (5)
Bacillus subtilis (5)
Arabidopsis thaliana (5)
Caulobacter vibrioides (4)
Yersinia pestis (4)
Salmonella enterica subsp. enterica serovar Typhimurium (4)
Pseudomonas aeruginosa PAO1 (4)
Enterococcus faecalis (4)
Caenorhabditis elegans (4)
Danio rerio (4)
Citrus limonia (3)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (3)
Dictyostelium discoideum (3)
Aspergillus fumigatus (3)
Listeria monocytogenes (3)
Apis mellifera (3)

Repository

biostudies-arrayexpress (787)
pride (68)
iProX (49)
MassIVE (40)
MetaboLights (18)
EGA (15)
jPOST (9)
PeptideAtlas (3)
GPMDB (1)
PAXDB (1)

Tissue

Cell culture (13)
Leaf (6)
Brain (5)
Epithelial cell (4)
Liver (4)
Plant cell (4)
Others (3)
Blood plasma (3)
Permanent cell line cell (3)
Whole body (3)
Colon (2)
HEK-293T cell (2)
Melanocyte (2)
Photosynthetic cell (2)
Primary cell (2)
Shoot (2)
Skin (2)
T cell (2)
Adipose tissue (1)
Blood (1)
Electrically active cell (1)
Epididymal white adipose tissue (1)
Fat body (1)
HCT-116 cell (1)
Heart (1)
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Lung (1)
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Muscle (1)

Disease

Normal (2)
Acute leukemia (2)
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Disease free (2)
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EAE-resistant (1)
Neuroepithelioma (1)
Glioma (1)
Infected with Influenza A/WSN/33 (H1N1) (1)
Xenografts with H1299 cell line (1)
Not infected (1)
Resistant (1)
Acute promyelocytic leukemia (1)
Osteosarcoma (1)
Breast carcinoma (1)
Not Available (1)
Breast cancer (1)
Cardiovascular system disease (1)
Chronic obstructive pulmonary disease (1)
Lung cancer (1)
Melanoma (1)
Ovarian cancer (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (68)
Shotgun proteomics (23)
Mass spectrometry (16)
Bottom-up proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (8)
Data-dependent acquisition (6)
Data-independent acquisition (5)
SWATH MS (3)
Mass spectrometry assay (2)
All-ion fragmentation (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA, Illumina HiSeq 2000 (1)
Mass spectrometry imaging (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (17)
NextSeq 500 (14)
Illumina NovaSeq 6000 (10)
Illumina HiSeq 2500 (8)
Illumina MiSeq (5)
GenePix 4000B [Axon Instruments] (4)
Illumina HiSeq 1500 (3)
Illumina HiSeq 4000 (3)
G2500A GeneArray scanner [Agilent Technologies] (2)
GenePix Professional 4200A [Axon Instruments] (2)
Other (2)
Illumina Genome Analyzer II (2)
Illumina NovaSeq X (2)
Illumina HiSeq 3000 (2)
DNBSEQ-G50 (1)
Bioinformatics Core Facility, Centre for Molecular Medicine, CEITEC Masaryk University (1)
Cell culture laboratory, BSL-3 lab (1)
Library preparation kit (1)
RNA isolation laboratory (1)
BSL-3 laboratory (1)
Desktop (1)
GenePix4000B (1)
DNA microarray scanner (Agilent #G2565CA) (1)
IScan Illumina (1)
Ion Chef™ System and Ion S5™ System or Ion GeneStudio™ S5 Systems. (1)
HP GeneArray [Affymetrix/HP] (1)
ScanArray 4000XL [PerkinElmer] (1)
Affymetrix Fluidics Station 400 (1)
NextSeq 1000 (1)
DNBSEQ-G400 (1)

Publication Date

2010 (125)
2012 (100)
2013 (99)
2011 (98)
2014 (75)
2008 (56)
2015 (49)
2022 (47)
2016 (42)
2009 (42)
2025 (35)
2023 (31)
2024 (29)
2007 (26)
2021 (23)
2020 (21)
2017 (20)
2026 (17)
2019 (11)
2006 (10)
2005 (10)
2018 (6)
2004 (1)

UNIPROT ID/AC

ACDA_METTH (1)
ACDB_METTH (1)
ACDD_METTH (1)
ACDE_METTH (1)
ACDG_METTH (1)
ADHS_METTH (1)
AKSA_METTH (1)
ALBA_METTH (1)
AMTAB_METTH (1)
APGM1_METTH (1)
APGM2_METTH (1)
ARFB_METTH (1)
ARGB_METTH (1)
ARGC_METTH (1)
ARGD_METTH (1)
ARGJ_METTH (1)
ARLY_METTH (1)
AROA_METTH (1)
AROC_METTH (1)
AROD_METTH (1)
AROE_METTH (1)
AROK_METTH (1)
ARSA_METTH (1)
ASPD_METTH (1)
ASSY_METTH (1)
ATGT_METTH (1)
BRIX_METTH (1)
BSUHB_METTH (1)
CAPPA_METTH (1)
CARA_METTH (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15428 (6)
CHEBI:16865 (6)
CHEBI:17351 (6)
CHEBI:15741 (5)
CHEBI:15756 (5)
CHEBI:15891 (5)
CHEBI:16750 (5)
CHEBI:17268 (5)
CHEBI:18012 (5)
CHEBI:18237 (5)
CHEBI:27266 (5)
CHEBI:28044 (5)
CHEBI:28842 (5)
CHEBI:30769 (5)
CHEBI:7916 (5)
CHEBI:15603 (4)
CHEBI:15611 (4)
CHEBI:16015 (4)
CHEBI:16335 (4)
CHEBI:16449 (4)
CHEBI:16708 (4)
CHEBI:16811 (4)
CHEBI:16828 (4)
CHEBI:17196 (4)
CHEBI:17509 (4)
CHEBI:17596 (4)
CHEBI:17822 (4)
CHEBI:17929 (4)
CHEBI:18050 (4)
CHEBI:18183 (4)

Metabolite Name

Adenine (5)
5'-Methylthioadenosine (4)
Adenosine (4)
Glycine (4)
Guanosine (4)
Inosine (4)
L-Methionine (4)
1-Methylxanthine (3)
Betaine (3)
Choline (3)
Cytidine (3)
Fumaric acid (3)
Glutamine (3)
Hypoxanthine (3)
Isoleucine (3)
Kynurenic acid (3)
L-Arginine (3)
L-Carnitine (3)
L-Glutamine (3)
L-Leucine (3)
L-Phenylalanine (3)
L-Proline (3)
L-Tryptophan (3)
Purine (3)
Riboflavin (3)
Taurine (3)
Threonine (3)
Valine (3)
(2S,3R)-2-Hydroxy-3-(indol-3-yl)butanoate (2)
2,4-Dihydroxyhept-2-enedioate (2)

Study type

Transcription profiling by array (469)
RNA-seq of coding RNA (75)
Transcription profiling by RT-PCR (65)
ChIP-seq (40)
Other (33)
Unknown experiment type (32)
High-throughput sequencing (9)
Transcription profiling by tiling array (9)
RNA-seq of non coding RNA (9)
ChIP-chip by tiling array (6)
Methylation profiling by array (6)
RNA-seq of coding RNA from single cells (5)
Comparative genomic hybridization by array (4)
DNA-seq (3)
Methylation profiling by high throughput sequencing (3)
RNA-seq of total RNA (3)
Animal - High-throughput sequencing (2)
RNAi profiling by array (2)
ChIP-chip by array (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
CLIP-Seq (1)
Human - High-throughput sequencing (1)
Antigen profiling (1)
Bisulfite-seq (1)
RIP-seq (1)

Release Date

2025 (750)
2022 (677)
2024 (610)
2023 (590)
2021 (488)
2020 (347)
2019 (253)
2018 (190)
2017 (181)
2016 (166)
2015 (152)
2014 (141)
2012 (133)
2010 (133)
2013 (131)
2011 (117)
2026 (114)
2008 (62)
2009 (56)
2007 (27)
2006 (14)
2005 (11)
2004 (1)

Lab affiliation

Beijing proteome research center (3)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (3)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Jinan University (2)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and 9 Technology, Jinan University, Guangzhou 510632, China (2)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
New Cornerstone Science Laboratory, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, China (2)
Shenzhen Hospital of Southern Medical University (2)
3. College of Pharmacy / International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development of Ministry of Education (MOE) of China, Jinan University, Guangzhou 510632, China (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences,Guangzhou, China (1)
Cancer Institute, Fudan University Shanghai Cancer Center (1)
Center of Growth Metabolism and Aging, College of Life Sciences, Sichuan University, Chengdu, China. (1)
College of Life Sciences, Shandong Normal University (1)
Department of Clinic Laboratory, Shanghai Children’s Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, China (1)
Department of Gastrointestinal Surgery, The First Affiliated Hospital of Zhengzhou University Department of Gastrointestinal Surgery, The First Affiliated Hospital of Zhengzhou University (1)
Department of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY, USA (1)
Department of oncology and pathology, Karolinska Institute, Stockholm, Sweden (1)
Division of Plastic and Reconstructive Surgery, The First Affiliated Hospital of Sun Yat-sen University (1)
Guang'anmen Hospital of China Academy of Chinese Medical Sciences (1)
Harvard Medical School (1)
Huazhong University of Science and Technology, China (1)
Institute of Life and Health Engineering Assistant Director, Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes Jinan University (1)
Institute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China. (1)
Institute of Systems Biomedicine Peking University Health Science Center Beijing 100191, P.R. China (1)
Institute of Zoology, Chinese Academy of Sciences (1)
Key Laboratory of Brain Functional Genomics of Ministry of Education, Shanghai Key Laboratory of Brain Functional Genomics, and Shanghai Key Laboratory of Regulatory Biology, School of Life Sciences, East China Normal University, Shanghai, 100021, China (1)
Kunming Institute of Botany, CAS (1)
Laboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China (1)

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Expression data from mouse skeletal muscle

We generated skeletal muscle-specific knockout mice lacking the transcription factor Yin Yang 1 (YY1) and analyzed expression patterns in the skeletal muscle these mice. We used microarrays to detail the global programme of gene expression regulated by YY1. Wild type or knockout mice at 6 months wer...

ORGANISM(S): Mus musculus

2012-06-29 | E-GEOD-39009 | biostudies-arrayexpress

Genome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing

By applying ChIP-seq, we generated genome-wide maps of YY1 in skeletal myoblasts and myotubes. We found that YY1 binds to 1820 confident target with a large portion residing in the intergenic regions. In addition, YY1 was found to activate many loci, and there is no significant overlap between YY1 a...

ORGANISM(S): Mus musculus

2013-08-15 | E-GEOD-45875 | biostudies-arrayexpress

Towards practical and robust DNA-based data archiving using the yin-yang codec system.

Not available

S-EPMC10766522 | biostudies-literature

Dynamic Yin-Yang regulation network of O-GlcNAcylation and phosphorylation mediates vernalization response for flowering in winter wheat

Protein post-translational modification (PTM) increases the functional diversity of the proteome and regulates numerous biological processes in eukaryotes. Two types of PTMs, O-linked-acetyl glucosamine modification (O-GlcNAc) and phosphorylation have been identified on the same amino acid, are cons...

ORGANISM(S): Triticum aestivum (Wheat)

2020-12-18 | PXD008285 | Pride