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TranscriptomicsTranscription profiling of fission yeast treated with hydrogen peroxide in fission yeast wild type and csx1 mutant cells
Time course experiments of hydrogen peroxide treated cells for both S. pombe wild type and csx1 mutant cells.
ORGANISM(S): Schizosaccharomyces pombe 
2004-10-01 | E-MEXP-176 | biostudies-arrayexpress
OtherDigestion and depletion of abundant proteins improves proteomic coverage.
Data from Yates lab web site. Experiment: yeast control replicate 2, file: 120211_Yeast_Control2_Step02.mzml. Published as part of Nat Methods. 2013 Jan;10(1):54-6 9 . From the Abstract: {{i}} We exploited the abundance-dependent Michaelis-Menten kinetics of trypsin digestion to selectively digest ...
ORGANISM(S): Yeast 
GPM32320001404 | GPMDB
UnknownHigh sensitivity (zeptomole) detection of BODIPY-labelled heparan sulfate (HS) disaccharides by ion-paired RP-HPLC and LIF detection enables analysis of HS from mosquito midguts.
Not available
S-EPMC10019443 | biostudies-literature
ProteomicsCovalent Protein Painting on Cancer Cell Lines
Cancer cells were labeled with Covalent Protein Painting and resulting peptides analyzed by mass spectrometry. For further information, please see: bioRxiv 2020.01.31.929117; doi: https://doi.org/10.1101/2020.01.31.929117
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2020-02-28 | MSV000085034 | MassIVE
UnknownProtein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae.
Not available
S-EPMC152254 | biostudies-literature
ProteomicsThe effects of Alcohol Dependence on the CSF Proteome in Mice: Evidence for Blood-Brain Barrier Dysfunction and Neuroinflammation
A DIA analysis of CSF from individual mice undergoing chronic intermittent ethanol via two-bottle choice (non dependent) method versus vapor group and two bottle choice (dependent).
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2025-11-03 | MSV000099732 | MassIVE
UnknownA potential protective role of the nuclear receptor-related factor 1 (Nurr1) in multiple sclerosis motor cortex: a neuropathological study.
Not available
S-EPMC10088483 | biostudies-literature
ProteomicsEpigenetic Silencing by SETDB1 Suppresses Tumor-cell Intrinsic Immunogenicity
Griffin GK, Wu J, Iracheta-Vellve A, Patti JC, Hsu J, Davis T, Dele-Oni D, Du PP, Halawi A, Ishizuka JJ, Kim S, Klaeger S, Knudsen NH, Miller BC, Nguyen T, Olander K, Papanastasiou M, Rachimi S, Robitschek EJ, Schneider EM, Yeary M, Zimmer M, Jaffe JD, Carr SA, Doench JG, Haining WN, Yates KB, Mangu...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2020-12-11 | MSV000086580 | MassIVE
ProteomicsImpact of the identification strategy on reproducibility of DDA and DIA results
Study of the impact of the identification strategy used for DDA and DIA results
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-11-17 | MSV000081719 | MassIVE
ProteomicsTargetSeeker-MS: A Bayesian Inference Approach for Drug Target Discovery using Protein Fractionation Coupled to Mass Spectrometry
Determining the affinity of a drug to its putative targets is critical to the understanding of its mechanism and to assess its clinical usefulness and viability. Energetics-based protein separation (EBPS) techniques, such as thermal shift assay, when coupled to mass spectrometry (MS) have shown grea...
ORGANISM(S): Homo sapiens (Human) Caenorhabditis elegans 
2026-04-06 | PXD010799 | Pride
Bioinformatics / drug target discovery / mass spectrometry / proteomics / thermal shift assay 
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