Yeasts - OmicsDI

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Transcriptomics (4077)
Unknown (3625)
Genomics (1089)
Proteomics (212)
Metabolomics (79)
Models (33)
Other (30)
Multiomics (5)

Organisms

Saccharomyces cerevisiae (1845)
Drosophila melanogaster (422)
Schizosaccharomyces pombe (348)
Homo sapiens (332)
Mus musculus (210)
Candida albicans (156)
Arabidopsis thaliana (99)
Thermus thermophilus HB8 (65)
Saccharomyces cerevisiae S288C (40)
Rattus norvegicus (36)
Danio rerio (35)
Caenorhabditis elegans (27)
Escherichia coli (23)
Cryptococcus neoformans (22)
Oncorhynchus mykiss (21)
Yarrowia lipolytica (17)
Streptococcus pyogenes (17)
Schizosaccharomyces pombe 972h- (16)
Streptococcus pneumoniae (15)
Zea mays (14)
Saccharomyces paradoxus (14)
Gallus gallus (13)
Shewanella piezotolerans WP3 (11)
Saccharomyces cerevisiae SK1 (11)
Dictyostelium discoideum (11)
Drosophila simulans (10)
Saccharomyces cerevisiae BY4741 (9)
Aspergillus niger (9)
Solenopsis invicta (9)
Saccharomycetaceae (1)

Organisms

Saccharomyces cerevisiae (78)
Candida albicans (14)
Schizosaccharomyces pombe (11)
Mus musculus (7)
Cryptococcus neoformans (5)
Saccharomyces eubayanus (5)
Yarrowia lipolytica (4)
food fermentation metagenome (4)
food metagenome (4)
Saccharomyces pastorianus (4)
Homo sapiens (4)
Lachancea kluyveri (3)
Saccharomyces cerevisiae BY4741 (3)
fermentation metagenome (3)
Fungi (3)
Salmo salar (3)
Nakaseomyces glabratus CBS 138 (2)
Cryptococcus deneoformans (2)
Nakaseomyces glabratus (2)
Candidozyma auris (2)
Monosporozyma servazzii (2)
Solicoccozyma terricola (2)
Cutaneotrichosporon curvatum (2)
Zygosaccharomyces sp. (2)
Sporidiobolales (2)
Saccharomyces x bayanus (2)
Saccharomyces cerevisiae BY4743 (2)
Saccharomyces (2)
Scheffersomyces stipitis (2)
Saccharomyces uvarum (2)

Repository

biostudies-arrayexpress (4390)
ENA (667)
geo (148)
MassIVE (85)
MetaboLights (76)
pride (73)
BioModels (27)
jPOST (26)
PAXDB (17)
GPMDB (10)
iProX (8)
Cell Collective (6)
PanoramaPublic (5)
EVA (4)
GNPS (3)
EGA (2)

Tissue

Cell culture (13)
Vegetative cell (sensu Fungi) (6)
Cell suspension culture (5)
Cell line cell (3)
Permanent cell line cell (2)
Plant cell (2)
Brain (1)
Diploid cell (1)
Egg (1)
Egg cell (1)
Fungal cell (1)
Intestine (1)
Lung (1)
Pancreas (1)
Seed (1)
Seedling (1)
Spleen (1)
Testis (1)
Whole body (1)

Disease

Normal (21)
Prostate cancer (5)
Mitochondrial complex I deficiency (2)
Squamous Cell Carcinoma (2)
Not infected (2)
Mammary tumor (2)
Neuroblastoma (2)
Hepatomegaly (1)
Unspecified peripheral T-cell lymphoma (1)
Perilobar nephrogenic rest (1)
Rett syndrome (1)
Colon cancer Dukes C (1)
Unclassified carcinoid (1)
No lesions (1)
Challenged with Pieris rapae larvae (1)
Mild hyperglycemia, liver dysfunction, and renal glycosuria (1)
Control exposed to non-pathogenic DSM-350 (1)
Pancreatic ductal adenocarcinoma (1)
Hodgkin lymphoma, mixed cellularity, stage IV (1)
MFC II (1)
Mammary adenocarcinoma (pleural effusion) (1)
No local recurrence (1)
Triple negative breast cancer (1)
Teratozoospermia and infertility (1)
Infected with Drechmeria coniospora (1)
Follicular lymphoma (1)
Oligodendroglioma (1)
Malignant fibrous histiocytoma (1)
Represent tolerant CD4+ T cells that have not been activated (1)
Follicular thyroid adenoma (1)

Technology Type

Mass Spectrometry (73)
Mass spectrometry (52)
Shotgun proteomics (36)
Mass spectrometry assay (23)
Bottom-up proteomics (19)
Data-dependent acquisition (14)
Gel-based experiment (8)
Affinity purification coupled with mass spectrometry proteomics (6)
SWATH MS (5)
Data-independent acquisition (2)
MSE (2)
ILLUMINA, Illumina MiSeq (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
HDMSE (1)
RNA mass spectrometry (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (69)
NextSeq 500 (53)
Illumina HiSeq 4000 (49)
Illumina HiSeq 2500 (47)
Axon GenePix 4000B scanning hardware (34)
Illumina NovaSeq 6000 (34)
Illumina MiSeq (22)
GenePix 4000A [Axon Instruments] (15)
AB SOLiD 4 System (9)
GenePix 4000B [Axon Instruments] (9)
NextSeq 550 (9)
Illumina HiSeq 3000 (9)
Illumina Genome Analyzer IIx (8)
Axon- GenePix4000B (8)
Illumina Genome Analyzer II (8)
G2565BA DNA microarray scanner [Agilent] (7)
ScanArray 4000XL [PerkinElmer] (7)
Ion Torrent Proton (7)
NextSeq 2000 (7)
418 [Affymetrix] (5)
ScanArray Express HT [PerkinElmer] (5)
Scanning hardware (5)
Vortex (5)
ScanArray scanning hardware (4)
ScanArray 4000 [PerkinElmer] (4)
ScanArray [PerkinElmer] (4)
ScanArray 5000 [PerkinElmer] (4)
GenePix Professional 4200A [Axon Instruments] (4)
Other (4)
Illumina NovaSeq X (4)

Publication Date

2010 (838)
2011 (514)
2013 (482)
2012 (410)
2014 (403)
2008 (328)
2015 (304)
2009 (234)
2016 (217)
2007 (159)
2005 (119)
2021 (101)
2006 (89)
2020 (82)
2023 (71)
2018 (70)
2022 (69)
2019 (60)
2026 (59)
2024 (55)
2025 (53)
2017 (52)
2004 (43)
2003 (11)
2002 (9)

UNIPROT ID/AC

6PGD1_YEAST (10)
AAP1_YEAST (10)
ACAC_YEAST (10)
ACON2_YEAST (10)
ADE_YEAST (10)
ADH3_YEAST (10)
ADH6_YEAST (10)
ADK_YEAST (10)
AHP1_YEAST (10)
AIP1_YEAST (10)
AK_YEAST (10)
ALDH6_YEAST (10)
ALF_YEAST (10)
ALO_YEAST (10)
APA1_YEAST (10)
APE2_YEAST (10)
P41411 (1)
Q10299 (1)
P24865 (1)
P01129 (1)
P32587 (1)
P78972 (1)
O13286 (1)
P25009 (1)
P36630 (1)
P40380 (1)
P10815 (1)
P06652 (1)
P30290 (1)
P07527 (1)

CHEBI ID

CHEBI:16551 (23)
CHEBI:17754 (21)
CHEBI:30031 (19)
CHEBI:4167 (15)
CHEBI:16236 (15)
CHEBI:28087 (15)
CHEBI:15343 (15)
CHEBI:15361 (15)
CHEBI:16526 (15)
CHEBI:11812 (13)
CHEBI:11596 (13)
CHEBI:77740 (13)
CHEBI:17164 (13)
CHEBI:74393 (13)
CHEBI:77802 (13)
CHEBI:35621 (13)
CHEBI:58680 (13)
CHEBI:74631 (13)
CHEBI:15593 (13)
CHEBI:132957 (13)
CHEBI:74604 (13)
CHEBI:32528 (13)
CHEBI:58675 (13)
CHEBI:58083 (13)
CHEBI:73784 (13)
CHEBI:73898 (13)
CHEBI:320061 (13)
CHEBI:73888 (13)
CHEBI:74363 (13)
CHEBI:73771 (13)

Metabolite Name

Adenosine (10)
Hypoxanthine (9)
Valine (8)
L-Tryptophan (8)
Biotin (8)
Leucine (7)
Glycine (7)
Citrulline (7)
Ornithine (7)
Taurine (7)
Arginine (7)
Proline (7)
Adenine (7)
Uracil (7)
Creatine (7)
Tryptophan (7)
Inosine (7)
Succinic acid (6)
Serine (6)
Glycerol (6)
ATP (6)
Tyrosine (6)
Phenylalanine (6)
AMP (6)
Methionine (6)
Lysine (6)
Tyrosine (6)
Riboflavin (6)
Glutamine (6)
Uridine (6)

First Public Date

2014 (71)
2026 (67)
2025 (63)
2023 (62)
2013 (57)
2022 (54)
2024 (49)
2020 (44)
2021 (43)
2018 (40)
2019 (38)
2017 (32)
2015 (27)
2016 (14)
2012 (5)
2010 (1)

Modelling Approach

Constraint-based model (18)
Ordinary differential equation model (5)

Lab affiliation

Departament de Bioquímica i Biologia Molecular Universitat de València (2)
Department of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (2)
Dept. of Molecular and Cellular Biology, University of Geneva (2)
Federal University of São Paulo - Institute of Science and Technology - Applied Immunology Lab (2)
Group Systems Biology of Motor Proteins, Department of NMR-based Structural Biology, Max-Planck-Institute for Biophysical Chemistry, Göttingen, Germany (2)
Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad, India (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising DEUTSCHLAND / GERMANY Tel. / Phone: +49 8161 71-6130 E-Mail: tina.ludwig@tum.de www.baybioms.tum.de (1)
Biochemistry and molecular biology department, Universidade Federal de Goias, Brazil (1)
Biological Sciences Division, Pacific Northwest National Laboratory (1)
Biozentrum, University of Basel, Switzerland (1)
CR Université Grenoble Alpes, Institute for Advanced Biosciences, Inserm U1209, CNRS UMR 5309, Grenoble, France (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (1)
Chair of Drug and Cosmetics Biotechnology, Faculty of Chemistry Warsaw University of Technology, Poland (1)
Charité Universitätsmedizin Berlin (1)
Conway Institute and School of Medicine, University College Dublin, Dublin 4, Ireland (1)
Departament de Bioquímica i Biologia Molecular Universitat de València Spain (1)
Department of Biology (1)
Department of Biomedicine, Biotechnology and Public Health, University of Cádiz, Spain (1)
Department of Inorganic Chemistry and Chemical Engineering, Chemical Engineering Area, Marie Curie Building (C3), Campus of Rabanales, Chemical Institute for Energy and Environment (IQUEMA), Agrifood Campus of International Excellence ceiA3, Universidad de Córdoba, Ctra. N-IV-A, Km 396, 14014, Córdoba, Spain (1)
Department of Life Sciences, Chalmers University of Technology, 412 96, Gothenburg, Sweden (1)
EDyP/BGE/IRIG/CEA Grenoble (1)
EMBL Heidelberg (1)
Faculty of Veterinary Medicine Department of Preclinical Sciences and Pathology (PREPAT), Norwegian University of Life Sciences (NMBU), ÅS, Norway (1)
Federal university of São Paulo - Institute of Science and Technology - Applied immunology lab (1)
Fluminense Federal Unibersity (1)
Group Systems Biology of Motor Proteins, Department of NMR-based Structural Biology, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany (1)
IGMM, CNRS, University of Montpellier, Montpellier, France Ligue Nationale Contre le Cancer team (1)
Institut Jacques Monod (1)
Institut für Biochemie FB08, B050 Justus-Liebig-Universität Gießen Heinrich-Buff-Ring 17 35392 Gießen Germany (1)

IsPrivate

False (27)

Model Flag

Non Kinetic (4)

Submitter Keywords

FROG (3)

Classification

fungi (39)
protozoa (1)

Modification

N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (2403)
RNA-seq of coding RNA (442)
ChIP-seq (361)
ChIP-chip by tiling array (187)
Comparative genomic hybridization by array (180)
Unknown experiment type (178)
ChIP-chip by array (165)
Other (128)
Transcription profiling by tiling array (81)
RNA-seq of non coding RNA (62)
High-throughput sequencing (22)
DNA-seq (21)
Cell line - High-throughput sequencing (12)
Methylation profiling by array (12)
RNA-seq of total RNA (12)
RNAi profiling by array (10)
RIP-chip by array (8)
Animal - High-throughput sequencing (8)
Genotyping by array (8)
RIP-seq (8)
Translation profiling (6)
Proteomic profiling by array (6)
MNase-seq (5)
Methylation profiling by high throughput sequencing (5)
MicroRNA profiling by array (4)
RNA-seq of coding RNA from single cells (4)
Two-color microarray (3)
Tiling path by array (3)
CLIP-seq (3)
Animal - One-color microarray (2)

Release Date

2010 (881)
2013 (580)
2011 (561)
2014 (518)
2012 (480)
2015 (422)
2023 (396)
2022 (385)
2021 (385)
2016 (370)
2008 (361)
2020 (360)
2025 (317)
2024 (306)
2009 (268)
2019 (258)
2018 (232)
2017 (214)
2007 (188)
2005 (150)
2006 (128)
2004 (65)
2026 (64)
2003 (34)
2002 (29)
1998 (18)
2001 (17)
2000 (15)
1999 (11)
1997 (1)

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Volatilomic and sensorial profiles of Cabernet Sauvignon wines fermented with different commercial yeasts

Cabernet Sauvignon wines from San Vicente, B.C., México, vintage 2021 fermented with three different commercial yeasts (WLP740, ICVD80 and ICVD254) were analyzed by HS-SPME-GC-qTOF/MS.

2025-06-18 | MTBLS4785 | MetaboLights

Untangling the wine metabolome by combining untargeted SMPE-GCxGC-TOF-MS and sensory analysis to profile Sauvignon blanc co-fermented with seven different yeasts

Saccharomyces cerevisiae (SC) is the main driver of alcoholic fermentation however for aroma and flavour formation in wine non-Saccharomyces species can have a powerful effect. This study aimed to compare untargeted volatile compound profiles from SPME-GCxGC-TOF-MS and sensory analysis data of Sauvi...

2015-08-19 | MTBLS212 | MetaboLights

Yeasts

Mix of 11 yeasts species metagenome

PRJNA293660 | ENA

Karyotyping of maltose-fermenting Saccharomyces yeasts with differing maltotriose utilization profiles

Aims: We performed an analysis of maltotriose utilization by 52 Saccharomyces yeast strains able to ferment maltose efficiently and correlated the observed phenotypes with differences in the copy number of genes possibly involved in maltotriose utilization by yeast cells. Methods and Results: The an...

ORGANISM(S): Saccharomyces cerevisiae

2010-07-22 | E-GEOD-23055 | biostudies-arrayexpress

Winemaking yeasts

Winemaking yeasts Genome sequencing and assembly

PRJNA1019646 | ENA

DNA microarray comparison of gene expression patterns in Paracoccidioides brasiliensis mycelia and yeasts in vitro.

Paracoccidioides brasiliensis is a thermally dimorphic fungus, which causes the most prevalent systemic mycosis in Latin America. Infection is initiated by inhalation of conidia or mycelial fragments by the host, followed by further differentiation into the yeast form. Information regarding gene e...

ORGANISM(S): Paracoccidioides brasiliensis

2009-05-07 | E-GEOD-15511 | biostudies-arrayexpress

Taxonomic revision of yeasts

PRJEB28567 | ENA

Stress response in yeasts

Transcriptome response of the yeasts C. glabrata and S. cerevisiae treated by an antifungal agent, benomyl Keywords: time course; stress response We performed microarray analyses of the transcriptome response of the yeasts Candida glabrata and Saccharomyces cerevisiae, treated by an antifungal agent...

ORGANISM(S): Saccharomyces cerevisiae

2010-06-20 | E-GEOD-10244 | biostudies-arrayexpress

Wickerhamomyces and Ogataea yeasts

Wickerhamomyces and Ogataea yeasts Genome sequencing

PRJNA663430 | ENA

Stress response in yeasts

PRJNA108427 | ENA

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